Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_O09
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 27 2.4
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 27 3.1
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 27 4.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.1
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha... 27 4.1
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos... 26 5.5
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 5.5
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 26 5.5
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 26 7.2
SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 7.2
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 25 9.5
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 324 KELENMSVKTGDEGSESEYSGTLRSGTFKTFQTFASDWSQCSNISFHKLLN 476
KE EN V E + + GT+R G TF S+WS+ + HK+++
Sbjct: 430 KECENNVVVYMPEIDKDKLGGTMRLGLRPTFFQPNSEWSKLRKL--HKMVD 478
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +3
Query: 189 PGFFQENLGSTGLTQQAVSKHEAMMTYGHKSNKTKSDAENELTIVKELENM 341
P N+ S + A+ +H+A KS + S A+N L +++ELEN+
Sbjct: 85 PSLADANVNSMK-SNNAIQEHKAAKFVSEKSLEKVSTADNNL-VLQELENL 133
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +3
Query: 180 WQNPGFFQENLGSTGLTQQAVSKHEAMMTYGHKSNKTKSDAENELTIVKELENMS 344
+ N FFQ +G + SK+EA N+ EN L+ + EL + S
Sbjct: 111 YNNHFFFQSLIGKRAADAKKNSKYEANAAINKAVNENFGSKENLLSKIHELASNS 165
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +3
Query: 243 SKHEAMMTYGHKSNKTKSDAENELTIVKELENMSVKTGDEGSESEYSGTLRSGTFKT 413
SKHEA H+S++ AE + K+ + S ++ S LR+ T +T
Sbjct: 601 SKHEARPESKHESHRESKSAEKDKKDKKDKKEDSKRSRSHSVSKPDSSKLRTWTDRT 657
>SPBC30B4.08 |eri1||double-strand siRNA
ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 83 KFRSK-LKGKTKGKRWQKGQSSNSNPKIQKY 172
KFR K L+ K K +R+QK +SN N +Y
Sbjct: 51 KFREKRLEEKRKQERYQKFSTSNENKTCLRY 81
>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 383 WYIKIRNIQDISNICI*LES 442
WY+K RNI +S+IC L +
Sbjct: 98 WYLKERNINVLSDICFPLSN 117
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -1
Query: 386 TRVFRL*ALVSGLDRHIFKLFYYGQFIFSI*FCFVRFMSICHHSFMLGHRLL 231
T +F +L S + F+LF+ F F + + F+ F ++ F+ H L+
Sbjct: 2 TGMFFFASLFSSFESLFFRLFFVCSFFFPLLYSFI-FATLHAFVFLFSHTLV 52
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 5.5
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = -3
Query: 138 CPFCHR--FPFVLPLSFDLNLPILVFHNTKQMKDVTHVGKKCSVIGRP 1
C FC + FPF + NLP + + H+GK C G+P
Sbjct: 778 CNFCRKPIFPFSNRNECN-NLPTPIQRGVSKAGPAKHLGKSCPHCGQP 824
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Frame = +3
Query: 516 AVLAAVTEVIKEQGGKETTTEYFAAL-METLKAS--ELEDNLVATITLLS--MGIKAVPQ 680
A L + Q GKE TTEY + +E LK E+ N+++ + +++ +GI+ + Q
Sbjct: 341 AALGMNIGALAPQLGKEKTTEYLLPMFLELLKDENPEVRLNIISKLEVVNKVVGIELLSQ 400
Query: 681 AVL 689
++L
Sbjct: 401 SLL 403
>SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 192 GFFQENLGSTGLTQQAVSKHEAMMTYGHKSNKTKSDAENE 311
G F + LG + ++ VSK+E + G K T E E
Sbjct: 85 GLFNKELGEENVDEKDVSKNEEVDVNGTKITDTSELTERE 124
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +3
Query: 456 SFHKLLNRF-DSNNALHKEMLAVLAA 530
+F KLL + D + LHKEML VL++
Sbjct: 873 NFMKLLKKTNDEHQNLHKEMLVVLSS 898
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,173,380
Number of Sequences: 5004
Number of extensions: 62908
Number of successful extensions: 185
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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