Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_O08
(784 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 31 0.25
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 29 0.57
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 28 1.3
SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc... 28 1.7
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos... 27 2.3
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 27 3.0
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc... 27 3.0
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 27 3.0
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 26 5.3
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 26 5.3
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 26 5.3
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 26 5.3
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 26 7.0
SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone... 25 9.3
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 30.7 bits (66), Expect = 0.25
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 430 FVQLENSSFSPEHS*FG-QFSRATHLPLSSFRYPSLHRH 317
F +E + FSP H G + S L + +F YP HRH
Sbjct: 312 FADIEQAGFSPSHMVPGIEVSADPVLQVRTFSYPDTHRH 350
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 29.5 bits (63), Expect = 0.57
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +1
Query: 346 TIAVNVSPEKTAQIRNVQAKMKSFPTARTHVRRVLAIHSSLVLSSKPKPCEEGCTCKPDY 525
+IA +++P KT++I A +K+ HV++ + L +SS P + PD+
Sbjct: 541 SIAGSLTPSKTSRIYRGLAPLKNPEFNEDHVKKAEHLEPLLNVSSS-VPSKNFTVSSPDH 599
Query: 526 LKLDDNSA 549
LK + S+
Sbjct: 600 LKYGNTSS 607
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 28.3 bits (60), Expect = 1.3
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Frame = -1
Query: 322 RHPALQYSCLTNGQGIGKSFSEHVLGPQCA------WTHFTYISFSEQRSEFGQFSRATH 161
R P LQY C NG+ F ++ P W+ F +I FS++ + F FS
Sbjct: 15 RGPVLQYQCPENGEASDLHFLAELMLPDRVHERREDWSLF-FIHFSKKSNVFSLFSNVDD 73
Query: 160 L---PLSSFRYPSLHT 122
+ P S Y L+T
Sbjct: 74 INFEPSDSNMYYVLNT 89
>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 297
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 63 KKDGPKICPLVEEKSCKAGCVCKEGYLKD 149
K GP IC L +E+ C+ K+G K+
Sbjct: 139 KSRGPLICKLRKEQEISLRCIAKKGIAKE 167
>SPBC21.07c |ppk24||serine/threonine protein kinase
Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 461
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +3
Query: 120 CVCKEGYLKDDSGKCVARENCPNSDLCSENEIYVKCVQAHC 242
CV +G C+ +E CP DL + E V ++ C
Sbjct: 194 CVTLTSVFNKSAGFCLVQEYCPQGDLFKQIEEKVLTLEDKC 234
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 27.1 bits (57), Expect = 3.0
Identities = 17/72 (23%), Positives = 29/72 (40%)
Frame = +3
Query: 30 VQAQCSPMTCSKKDGPKICPLVEEKSCKAGCVCKEGYLKDDSGKCVARENCPNSDLCSEN 209
+QAQ + +I L+ EKS + + + Y D GK + N E
Sbjct: 1291 LQAQDRAHRIGQTKEVRILRLITEKSIEENILSRAQYKLDLDGKVIQAGKFDNKSTPEER 1350
Query: 210 EIYVKCVQAHCG 245
E +++ + H G
Sbjct: 1351 EAFLRSLLEHDG 1362
>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 372
Score = 27.1 bits (57), Expect = 3.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 490 PCEEGCTCKPDYLKLDDNSACV 555
P + C CKP+ + L NS+C+
Sbjct: 337 PRKGRCFCKPEEIDLSSNSSCI 358
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 27.1 bits (57), Expect = 3.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 459 VNCKYAADMGSCSWKTLHFRLN 394
VN Y D+ +CSWK + ++ N
Sbjct: 58 VNDMYVVDLNTCSWKQVEYQGN 79
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -3
Query: 221 HVYFIFRAEVRIWAVFSGDTFTAIVFQISLFTHASGFAGLFLHQWADLRTVLL 63
+ Y+ + +R+ F + F + F+HA AGL LHQW + V++
Sbjct: 876 YCYYAIASFMRLGQAFFCVPGLSKQFLTAFFSHA---AGLSLHQWTSMVNVVI 925
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 346 TIAVNVSPEKTAQIRNVQAKMKS 414
TIA + P T Q+R ++AKMK+
Sbjct: 388 TIAGRMKPADTEQVRKLKAKMKA 410
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 26.2 bits (55), Expect = 5.3
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Frame = -1
Query: 223 FTYISFSEQRSEFGQFSRATHLPLSSFRYPSLHTHPALQDFSS-------TNGQILGPSF 65
FT ++F++ RS S + S + + ++ DFSS TNG P+
Sbjct: 14 FTILAFAQARSHSSSSSSTSKSSASHHSSINSTSATSVYDFSSLTTPIVPTNGVAQEPTL 73
Query: 64 FEHVIGLHCAWTQFTYIS 11
+E GL C Q IS
Sbjct: 74 YESSRGLSCPGYQARNIS 91
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 5.3
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -1
Query: 553 HRPNCRRVSSNLVC 512
H P+CRRV +++VC
Sbjct: 84 HNPSCRRVPNSIVC 97
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 7.0
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 153 SGKCVARENCPNS-DLCSENEIYVKCVQAHC--GPRTCSEKDLP 275
+G C A ENCP S L +E I ++ +C GP+ LP
Sbjct: 52 NGTCTAGENCPFSHSLETERPICKYFLKGNCKFGPKCALSHALP 95
>SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone
regulator|Schizosaccharomyces pombe|chr 2|||Manual
Length = 195
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +3
Query: 153 SGKCVARENCPNSDLCSENEIYVKCVQAHCGPRTCSEKDLPMPCPLVRQE 302
+GK + + S L +N + C++ H R EKD P P E
Sbjct: 50 AGKRLKDKKASLSKLGLKNHSKILCIRPHKQQRGSKEKDTVEPAPKAEAE 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,243,813
Number of Sequences: 5004
Number of extensions: 70442
Number of successful extensions: 200
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -