Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_O08
(784 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587... 32 0.59
01_05_0037 - 17452503-17452523,17452594-17452689,17453315-174534... 30 1.8
05_06_0040 + 25116732-25118030 29 4.2
10_07_0051 - 12373146-12373517,12375836-12376105,12377560-12377799 29 5.5
12_02_1189 - 26804775-26804930,26805020-26805123,26805346-268056... 28 7.3
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029... 28 7.3
04_03_0803 - 19835284-19836050,19836337-19836418 28 7.3
05_07_0105 - 27716126-27716218,27716548-27716658,27716764-277168... 28 9.6
>08_02_1091 +
24256025-24256190,24256806-24257978,24258066-24258733,
24258994-24260065,24260241-24260563,24260647-24260835,
24261400-24261506,24262103-24262163,24262617-24262634
Length = 1258
Score = 31.9 bits (69), Expect = 0.59
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +1
Query: 412 SFPTARTHVRRVLAIHSSLVLSSKPKPCEEGCTCKPDYLKLDDNSACVKICECPQMASSP 591
SFP R + H S + PC+ G + +PDYL N+ ICE P+M S+P
Sbjct: 308 SFPDKRVDENLKILEHQSSECHVRSPPCD-GSSLRPDYLA---NA----ICEAPKMLSTP 359
>01_05_0037 -
17452503-17452523,17452594-17452689,17453315-17453419,
17453699-17453869,17454309-17454378,17454698-17454879,
17457297-17457406,17458353-17458457,17458537-17458615,
17458722-17458762,17459019-17459097,17460620-17460814
Length = 417
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -2
Query: 387 NLGSFLGRHIYRYRLSDIPLYTGIRLCSTLASPMG--RA*VSPSLSTSLGRNVLGHI 223
NLG GRH+ + + P Y ++ C L + +G A + L T+L N+L HI
Sbjct: 126 NLGIITGRHLAELCMGEYPKY--VKYCLWLLAELGVIAATIPGVLGTALAYNMLLHI 180
>05_06_0040 + 25116732-25118030
Length = 432
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/82 (25%), Positives = 31/82 (37%)
Frame = +3
Query: 198 CSENEIYVKCVQAHCGPRTCSEKDLPMPCPLVRQEYCKAGCLCKEGYLKDDSGKCVAREN 377
C N Y +C++ CG + K +P P K LC + D + +
Sbjct: 53 CGTNSSY-QCLE--CGNEHSTSKPIPSFSPSQSSSNMKE--LCGSRFCVDIHSSDNSHDP 107
Query: 378 CPN*ECSGENEEFSNCTNPCPP 443
C C+ + CT PCPP
Sbjct: 108 CAAVGCAIPSFMSDLCTRPCPP 129
>10_07_0051 - 12373146-12373517,12375836-12376105,12377560-12377799
Length = 293
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 117 RLCRTFPPPMGRS*DRPSLSTSLGCTVLGHSSHIFH 10
R C++ P GR+ + P+LS+S TV G SH H
Sbjct: 228 RRCQSSPIRGGRAQEMPTLSSSTPSTVGGLGSHCRH 263
>12_02_1189 -
26804775-26804930,26805020-26805123,26805346-26805610,
26805697-26805795,26806284-26806425,26806516-26806621,
26806718-26806785,26806870-26806929,26807292-26807566,
26807671-26807748,26808137-26808391,26809167-26809199,
26809312-26809444,26810060-26810202,26810249-26810327,
26810434-26810533,26811278-26811521,26811620-26811735,
26811845-26812004,26812347-26812574
Length = 947
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 131 FTHASGFAGLFLHQWADLRTVLL*ARHWAALCLDTVHIYF 12
F +++G GLF + + +++ A LCL +H YF
Sbjct: 354 FDYSAGMQGLFSRTASPFQDIIVGKYESALLCLGNLHCYF 393
>08_02_1453 - 27199228-27200579,27200712-27202646,27202905-27202966,
27203525-27203545,27204305-27204344,27204345-27204792,
27204866-27204964,27205071-27205394,27205446-27205574,
27205657-27205875,27205976-27206194,27206436-27206669,
27206773-27206943,27207466-27207577,27207955-27208010,
27208083-27208181,27208901-27209134,27209258-27209311,
27209363-27209422
Length = 1955
Score = 28.3 bits (60), Expect = 7.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 553 VKICECPQMASSPDCPKL 606
++I +CP++A PDCP L
Sbjct: 1701 LRISDCPKLAGIPDCPVL 1718
>04_03_0803 - 19835284-19836050,19836337-19836418
Length = 282
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Frame = +3
Query: 231 QAHCGPRTCSEKDLPMPCPLVRQEYCKAGCLCKEGYLKDDSGKCVARENCPN*ECSG--E 404
Q HC P+ + C +++C G CK +C C + +C G
Sbjct: 164 QCHCCPKPPPPETKTKACEYCSRDHCHGG--CKITPPPPPPSRC---GGCDHADCGGWCG 218
Query: 405 NEEFSNCTNPCPPRTC 452
+ NC P PP C
Sbjct: 219 GQPPINCPPPPPPSRC 234
>05_07_0105 -
27716126-27716218,27716548-27716658,27716764-27716815,
27716895-27717034,27717298-27717422,27717514-27717638,
27717853-27717898,27718374-27718947
Length = 421
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = -1
Query: 373 SRATHLPLSSFRYPSLHRHPALQYSCLTNGQGIGKSFSEHVLGPQCAWTH 224
S ++ L SF+ S+ + + +Y + +GQ +GKS+ + GP C +H
Sbjct: 164 SSSSSSDLLSFQLDSIIGNCSFRY--VRHGQNMGKSYVSLLFGPCCPLSH 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,066,292
Number of Sequences: 37544
Number of extensions: 475293
Number of successful extensions: 1223
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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