Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_O06
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    54   2e-08
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    32   0.081
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      30   0.33 
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   7.0  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    26   7.0  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   9.3  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    25   9.3  

>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 2/179 (1%)
 Frame = +3

Query: 234 FTRSDMVLSPQDWTSRIVAKLSPYINVDSPSATVRQRHEDYLNEELSYCRGLGVPAIMIS 413
           F   ++   P++   ++V   S ++ +DS    +  R E+ L +E SY    G+ +I+++
Sbjct: 73  FLDDEVAYHPEENVHKVVGLSSAWLELDSEDTLIADRSEEVLLKEASYASYCGLSSIILN 132

Query: 414 IHGRESN-NLARILQTYYETSHHPSLIWACVPMLCSRTYRECTEDDEEEKAWNEPWYWWS 590
             G  S  N+ R  +      +    +   V +          E   E+  + E W  W 
Sbjct: 133 --GPTSPMNVMRYARAVSSALNSTMNLKFLVQL--------AIESGHED--YFETWKMWD 180

Query: 591 KFHERLDWDKRVGVVLELS-AXLPSQEVXKRWLGEPXKAIIVPXSXFHNNKKGYPVLSR 764
                  +  R+ V LEL  A  P  E+  RW  EP + I +    F  N  GYPVL R
Sbjct: 181 TIRSACGYHPRLKVALELPPACSPPIELVNRWYAEPIEMITMSCMAFVPNPNGYPVLGR 239


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 32.3 bits (70), Expect = 0.081
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 426 ESNNLARILQTYYETSHHPSLIWACVPMLCSRTYRECTEDDEEEKAWNEPWYWWSK 593
           ++N+L R L    +T   P  ++  +   C R    C  DD+ +  WN   +W SK
Sbjct: 511 KTNDLVRSLDENLKTKSGPEKLYLIMARYCLR----CVYDDKMDSLWNSRSFWVSK 562


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = +3

Query: 342 RHEDYLNEELSYCRGLGVPAI----MISIHGRESNNLARILQTYYETSHHPSLIWACVPM 509
           RH D +N+ L +  G+G+P I    +  I+  E  NL +++   +  S+  S+     P+
Sbjct: 99  RHSDNINKFLDFIHGIGLPEIFHFELTDIY--EGKNLPKVIYCIHALSYFLSMQDLAPPL 156

Query: 510 LCSRTYRECTEDD 548
           + S      T++D
Sbjct: 157 IKSDENLSFTDED 169


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
 Frame = +3

Query: 261  PQDWTSRIVAKLSPYINVDSPSATVRQRHEDYLN-----EELSYCRGLGVPAIMISIHGR 425
            P   ++RI A  SP   ++  + +     + +L+     EEL    GL +  I    +GR
Sbjct: 2039 PSIESARIAANFSPVPIINGGNGSKEHPTQAFLDLYTIREELGSVNGLTITFIGDLKYGR 2098

Query: 426  ESNNLARILQTYYETSH 476
              ++LAR+L  ++   H
Sbjct: 2099 TVHSLARLLAFWHVELH 2115


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 679 LFXTSCDGRXADNSKTTPTRLSQSRRSWNLDHQYQ 575
           LF + C G   D+S  + T+LSQS  + +L H Y+
Sbjct: 282 LFLSKCIG-LTDSSLLSLTKLSQSLTTLHLGHCYE 315


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 510 LCSRTYRECTEDDEEEKAWNEPW 578
           LC   + +C ++D+EE  W E W
Sbjct: 86  LCQEKFEKCLKEDDEE--WIELW 106


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 270 WTSRIVAKLSPYINVDSPSATVRQR--HEDYLNEELSYCRGLGVPAI 404
           WT     K   +++VDS   +  +   +E    +++SYC G G+ ++
Sbjct: 192 WTEVYSNKQQRWVHVDSGEESFDEPLIYEQGWGKKMSYCLGFGIDSV 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,218,322
Number of Sequences: 5004
Number of extensions: 65911
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)