Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_O06
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-3|AAK95874.1|  734|Caenorhabditis elegans Hypothetical pr...    66   4e-11
AF039716-7|AAB96735.3|  617|Caenorhabditis elegans Sodium:neurot...    28   6.6  
Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>U10402-3|AAK95874.1|  734|Caenorhabditis elegans Hypothetical
           protein C34E10.5 protein.
          Length = 734

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 9/227 (3%)
 Frame = +3

Query: 129 TCLTEALQCSYSFIVSPI--IHPRFRRQSTNAGKNGG-FTRSDMVLSPQDWTSRIVAKLS 299
           T  T   +  Y+F+V PI  +   F   + +A  +       D+ L    W S +V K+S
Sbjct: 69  TFCTRLGEFKYNFVVYPIGGVVRAFWTPNGSAENHPPVIDLPDVQLRNDLWESYVVGKIS 128

Query: 300 PYINVDSPSATVRQRHEDYLNEELSYCRGLGVPAIMISIHGRESNNLARILQTYYETSHH 479
           P+I+ DS         E++L +ELSY   LG+  + I +    S   A IL+ +  T + 
Sbjct: 129 PWIDCDSSDPAFASLSEEHLLKELSYICYLGLQTMAIELTRISSPRTAAILKKWIWTRNS 188

Query: 480 PSLIWACVPMLCSRTYRECTEDDEEEKAWNEPWYWWSKFHERLDWDKRV--GVVLELSAX 653
              +W  +P        +C + D       + W  W+ F +       V   V L +S+ 
Sbjct: 189 RFTVWVQLP----SAIEKCKDYDAFTIEHVDLWTIWADFRKNCGNFSGVYFQVALTISSE 244

Query: 654 LPSQ----EVXKRWLGEPXKAIIVPXSXFHNNKKGYPVLSRAHQQLV 782
           LP +    ++  RW  EP  A ++    F + + G   +  AH  L+
Sbjct: 245 LPDELTELKLVDRWKAEPLAAFVIESGLFISGRNGEASIPSAHINLL 291


>AF039716-7|AAB96735.3|  617|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 1
           protein.
          Length = 617

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 537 CILYMFYYIA*VHMPILETDGGSFHNKFGEFWLNCC 430
           CI  MF  I  + + +L T    F + FGE W  CC
Sbjct: 381 CICTMFSVITILALSVLST----FEDAFGENWSKCC 412


>Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical
           protein C27D8.3b protein.
          Length = 916

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 423 RESNNLARILQTYYETSHHPSLI 491
           R +NNL +  Q ++++ HHPSLI
Sbjct: 844 RPNNNLNQQQQHHHQSHHHPSLI 866


>Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical
           protein C27D8.3a protein.
          Length = 982

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 423 RESNNLARILQTYYETSHHPSLI 491
           R +NNL +  Q ++++ HHPSLI
Sbjct: 910 RPNNNLNQQQQHHHQSHHHPSLI 932


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,924,921
Number of Sequences: 27780
Number of extensions: 368621
Number of successful extensions: 926
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)