Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_O04
(613 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D578C8 Cluster: PREDICTED: similar to poly A bin... 52 8e-06
UniRef50_Q4SJ33 Cluster: Chromosome 21 SCAF14577, whole genome s... 48 1e-04
UniRef50_Q5T3B0 Cluster: Poly(A) binding protein, cytoplasmic 4;... 48 1e-04
UniRef50_Q13310 Cluster: Polyadenylate-binding protein 4 (Poly(A... 48 1e-04
UniRef50_P21187 Cluster: Polyadenylate-binding protein (Poly(A)-... 46 0.001
UniRef50_A7SSV8 Cluster: Predicted protein; n=1; Nematostella ve... 42 0.009
UniRef50_UPI00006CBA24 Cluster: hypothetical protein TTHERM_0055... 40 0.062
UniRef50_Q4UID9 Cluster: Polyadenylate (Poly(A)) binding protein... 38 0.14
UniRef50_A1EAA0 Cluster: Polyadenylate-binding protein; n=3; Pla... 38 0.19
UniRef50_Q05196 Cluster: Polyadenylate-binding protein 5 (Poly(A... 37 0.43
UniRef50_Q7K797 Cluster: Putative uncharacterized protein pab-1;... 36 0.57
UniRef50_Q5KBW2 Cluster: Polyadenylate-binding protein, cytoplas... 36 1.0
UniRef50_Q7RDM4 Cluster: PolyA binding protein-related; n=5; Pla... 35 1.3
UniRef50_UPI000065E5EA Cluster: Polyadenylate-binding protein 1-... 34 2.3
UniRef50_A4S0L2 Cluster: Predicted protein; n=2; Eukaryota|Rep: ... 34 2.3
UniRef50_Q6BTN8 Cluster: Similar to CA5836|IPF428 Candida albica... 33 5.3
UniRef50_UPI0000D577C9 Cluster: PREDICTED: similar to poly(A) bi... 33 7.1
UniRef50_A3GH19 Cluster: Predicted protein; n=4; Saccharomycetal... 33 7.1
UniRef50_O97275 Cluster: Putative uncharacterized protein MAL3P5... 32 9.3
UniRef50_A6RJZ8 Cluster: Putative uncharacterized protein; n=2; ... 32 9.3
UniRef50_Q1DXH0 Cluster: Polyadenylate-binding protein, cytoplas... 32 9.3
>UniRef50_UPI0000D578C8 Cluster: PREDICTED: similar to poly A
binding protein, cytoplasmic 1 isoform 2; n=2;
Coelomata|Rep: PREDICTED: similar to poly A binding
protein, cytoplasmic 1 isoform 2 - Tribolium castaneum
Length = 558
Score = 52.4 bits (120), Expect = 8e-06
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = +1
Query: 1 KIDNSELLHMLEHAESLKAKVDEAVAVL 84
+IDNSELLHMLEH ESLKAKV+EAVAVL
Sbjct: 518 EIDNSELLHMLEHNESLKAKVEEAVAVL 545
>UniRef50_Q4SJ33 Cluster: Chromosome 21 SCAF14577, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 21
SCAF14577, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 380
Score = 48.4 bits (110), Expect = 1e-04
Identities = 23/28 (82%), Positives = 26/28 (92%)
Frame = +1
Query: 1 KIDNSELLHMLEHAESLKAKVDEAVAVL 84
+IDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 331 EIDNSELLHMLESPESLRSKVDEAVAVL 358
>UniRef50_Q5T3B0 Cluster: Poly(A) binding protein, cytoplasmic 4;
n=6; Euarchontoglires|Rep: Poly(A) binding protein,
cytoplasmic 4 - Homo sapiens (Human)
Length = 194
Score = 48.4 bits (110), Expect = 1e-04
Identities = 23/28 (82%), Positives = 26/28 (92%)
Frame = +1
Query: 1 KIDNSELLHMLEHAESLKAKVDEAVAVL 84
+IDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 150 EIDNSELLHMLESPESLRSKVDEAVAVL 177
>UniRef50_Q13310 Cluster: Polyadenylate-binding protein 4
(Poly(A)-binding protein 4) (PABP 4) (Inducible
poly(A)-binding protein); n=244; Eukaryota|Rep:
Polyadenylate-binding protein 4 (Poly(A)-binding protein
4) (PABP 4) (Inducible poly(A)-binding protein) - Homo
sapiens (Human)
Length = 644
Score = 48.4 bits (110), Expect = 1e-04
Identities = 23/28 (82%), Positives = 26/28 (92%)
Frame = +1
Query: 1 KIDNSELLHMLEHAESLKAKVDEAVAVL 84
+IDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 596 EIDNSELLHMLESPESLRSKVDEAVAVL 623
>UniRef50_P21187 Cluster: Polyadenylate-binding protein
(Poly(A)-binding protein); n=6; Bilateria|Rep:
Polyadenylate-binding protein (Poly(A)-binding protein)
- Drosophila melanogaster (Fruit fly)
Length = 634
Score = 45.6 bits (103), Expect = 0.001
Identities = 21/28 (75%), Positives = 26/28 (92%)
Frame = +1
Query: 1 KIDNSELLHMLEHAESLKAKVDEAVAVL 84
+I+NSELLHM+E E+LKAKV+EAVAVL
Sbjct: 597 EIENSELLHMIEDQEALKAKVEEAVAVL 624
>UniRef50_A7SSV8 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 584
Score = 42.3 bits (95), Expect = 0.009
Identities = 19/28 (67%), Positives = 25/28 (89%)
Frame = +1
Query: 1 KIDNSELLHMLEHAESLKAKVDEAVAVL 84
+IDN+ELLHMLE ++L+ KVDEAV+VL
Sbjct: 538 EIDNAELLHMLESRDALQMKVDEAVSVL 565
>UniRef50_UPI00006CBA24 Cluster: hypothetical protein
TTHERM_00558430; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00558430 - Tetrahymena
thermophila SB210
Length = 1322
Score = 39.5 bits (88), Expect = 0.062
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = -3
Query: 422 KVLKQL*LKINFLVNVKVKEFINSQRRNVDSYVFLFVNLHSLKL 291
K+L LK NFL+++K +F NS N+++Y+ L+ N L L
Sbjct: 728 KILSNKYLKNNFLIDLKYFDFSNSSNNNLNTYILLYCNFERLNL 771
>UniRef50_Q4UID9 Cluster: Polyadenylate (Poly(A)) binding protein,
putative; n=2; Theileria|Rep: Polyadenylate (Poly(A))
binding protein, putative - Theileria annulata
Length = 664
Score = 38.3 bits (85), Expect = 0.14
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +1
Query: 1 KIDNSELLHMLEHAESLKAKVDEAVAVL 84
+IDN ELL +LE + LKAK+DEA+ VL
Sbjct: 633 EIDNHELLQLLEDNDQLKAKIDEAIKVL 660
>UniRef50_A1EAA0 Cluster: Polyadenylate-binding protein; n=3;
Plasmodium|Rep: Polyadenylate-binding protein -
Plasmodium falciparum
Length = 875
Score = 37.9 bits (84), Expect = 0.19
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +1
Query: 1 KIDNSELLHMLEHAESLKAKVDEAVAVL 84
++DNSELL +LE+ E LK K+DEA+ VL
Sbjct: 844 EMDNSELLILLENEEQLKKKIDEALVVL 871
>UniRef50_Q05196 Cluster: Polyadenylate-binding protein 5
(Poly(A)-binding protein 5); n=47; Viridiplantae|Rep:
Polyadenylate-binding protein 5 (Poly(A)-binding protein
5) - Arabidopsis thaliana (Mouse-ear cress)
Length = 668
Score = 36.7 bits (81), Expect = 0.43
Identities = 16/28 (57%), Positives = 23/28 (82%)
Frame = +1
Query: 1 KIDNSELLHMLEHAESLKAKVDEAVAVL 84
++D +E+LH+LE E+LKAKV EA+ VL
Sbjct: 619 EMDQAEILHLLESPEALKAKVSEALDVL 646
>UniRef50_Q7K797 Cluster: Putative uncharacterized protein pab-1;
n=2; Caenorhabditis elegans|Rep: Putative
uncharacterized protein pab-1 - Caenorhabditis elegans
Length = 586
Score = 36.3 bits (80), Expect = 0.57
Identities = 16/28 (57%), Positives = 23/28 (82%)
Frame = +1
Query: 1 KIDNSELLHMLEHAESLKAKVDEAVAVL 84
+IDNSEL+ ML+ +E ++KVDEA +VL
Sbjct: 553 EIDNSELIMMLQDSELFRSKVDEAASVL 580
>UniRef50_Q5KBW2 Cluster: Polyadenylate-binding protein, cytoplasmic
and nuclear (Poly(A)- binding protein); n=2;
Eukaryota|Rep: Polyadenylate-binding protein,
cytoplasmic and nuclear (Poly(A)- binding protein) -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 673
Score = 35.5 bits (78), Expect = 1.0
Identities = 15/28 (53%), Positives = 23/28 (82%)
Frame = +1
Query: 1 KIDNSELLHMLEHAESLKAKVDEAVAVL 84
++DN+ELLH++E +L+ KVDEA+ VL
Sbjct: 614 EMDNAELLHLVESQPALQEKVDEALRVL 641
>UniRef50_Q7RDM4 Cluster: PolyA binding protein-related; n=5;
Plasmodium (Vinckeia)|Rep: PolyA binding protein-related
- Plasmodium yoelii yoelii
Length = 859
Score = 35.1 bits (77), Expect = 1.3
Identities = 15/26 (57%), Positives = 22/26 (84%)
Frame = +1
Query: 1 KIDNSELLHMLEHAESLKAKVDEAVA 78
++DNSELL +LE+ + LK K+DEA+A
Sbjct: 810 EMDNSELLILLENEDQLKKKIDEALA 835
>UniRef50_UPI000065E5EA Cluster: Polyadenylate-binding protein
1-like.; n=3; Euteleostomi|Rep: Polyadenylate-binding
protein 1-like. - Takifugu rubripes
Length = 648
Score = 34.3 bits (75), Expect = 2.3
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 1 KIDNSELLHMLEHAESLKAKV 63
+IDNSELLHMLE ESL +KV
Sbjct: 628 EIDNSELLHMLETPESLHSKV 648
>UniRef50_A4S0L2 Cluster: Predicted protein; n=2; Eukaryota|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 572
Score = 34.3 bits (75), Expect = 2.3
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +1
Query: 1 KIDNSELLHMLEHAESLKAKVDEAVAVL 84
++D SE+LH++E ++L +KV EA+AVL
Sbjct: 537 EMDQSEVLHLIESPDALTSKVQEALAVL 564
>UniRef50_Q6BTN8 Cluster: Similar to CA5836|IPF428 Candida albicans;
n=2; Saccharomycetaceae|Rep: Similar to CA5836|IPF428
Candida albicans - Debaryomyces hansenii (Yeast)
(Torulaspora hansenii)
Length = 240
Score = 33.1 bits (72), Expect = 5.3
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 393 YFKLKLFENFRYIHFSLIYYLILWELALVLSFIITFTSVF 512
+FK +L NF Y+ FS +L W L+ V + I F VF
Sbjct: 108 FFKNELIANFLYMFFSFAGFLAFWLLSWVTTNFILFIIVF 147
>UniRef50_UPI0000D577C9 Cluster: PREDICTED: similar to poly(A)
binding protein, cytoplasmic 1; n=1; Tribolium
castaneum|Rep: PREDICTED: similar to poly(A) binding
protein, cytoplasmic 1 - Tribolium castaneum
Length = 565
Score = 32.7 bits (71), Expect = 7.1
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +1
Query: 1 KIDNSELLHMLEHAESLKAKVDEAVAVL 84
+ID SEL ++ + SLKAKV+EAVAVL
Sbjct: 527 EIDISELKALVNNEGSLKAKVEEAVAVL 554
>UniRef50_A3GH19 Cluster: Predicted protein; n=4;
Saccharomycetales|Rep: Predicted protein - Pichia
stipitis (Yeast)
Length = 505
Score = 32.7 bits (71), Expect = 7.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 393 YFKLKLFENFRYIHFSLIYYLILWELALVLSFIITFTSVF 512
YFK +L NF YI S + Y + W A ++ F VF
Sbjct: 373 YFKTELMANFVYIILSTLGYFVFWLFAATNWVVLLFLVVF 412
>UniRef50_O97275 Cluster: Putative uncharacterized protein MAL3P5.4;
n=2; Plasmodium|Rep: Putative uncharacterized protein
MAL3P5.4 - Plasmodium falciparum (isolate 3D7)
Length = 1816
Score = 32.3 bits (70), Expect = 9.3
Identities = 11/38 (28%), Positives = 25/38 (65%)
Frame = -3
Query: 401 LKINFLVNVKVKEFINSQRRNVDSYVFLFVNLHSLKLH 288
L N ++N K F+N ++ N+ +Y+ ++VN++ + L+
Sbjct: 879 LNKNIIINKKYFHFLNQEKINIRNYINIYVNINKIYLN 916
>UniRef50_A6RJZ8 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 790
Score = 32.3 bits (70), Expect = 9.3
Identities = 13/27 (48%), Positives = 22/27 (81%)
Frame = +1
Query: 1 KIDNSELLHMLEHAESLKAKVDEAVAV 81
+++N EL++++E SL+AKVDEA+ V
Sbjct: 735 EMENQELINLIEDDASLRAKVDEALTV 761
>UniRef50_Q1DXH0 Cluster: Polyadenylate-binding protein, cytoplasmic
and nuclear (Poly(A)- binding protein); n=11;
Pezizomycotina|Rep: Polyadenylate-binding protein,
cytoplasmic and nuclear (Poly(A)- binding protein) -
Coccidioides immitis
Length = 768
Score = 32.3 bits (70), Expect = 9.3
Identities = 14/27 (51%), Positives = 22/27 (81%)
Frame = +1
Query: 1 KIDNSELLHMLEHAESLKAKVDEAVAV 81
++DN+ELL +++ +LKAKVDEA+ V
Sbjct: 707 EMDNAELLALVDDDAALKAKVDEALTV 733
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 400,616,472
Number of Sequences: 1657284
Number of extensions: 5931504
Number of successful extensions: 16445
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 15926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16438
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43977329078
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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