Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_O04
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    29   0.40 
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz...    27   2.8  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   6.5  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   6.5  
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    25   6.5  

>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +1

Query: 1   KIDNSELLHMLEHAESLKAKVDEAVAVL 84
           ++ NSELL +LE   +L  +V+EA+ VL
Sbjct: 614 EMPNSELLELLEDDSALNERVNEAIGVL 641


>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 414 ENFRYIHFSLIYYLILWELALVLSF 488
           +NF Y+ F  ++ L++W++  + SF
Sbjct: 184 KNFAYLTFISLFVLVIWQILYLRSF 208


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 277  YALLCNFKECKFTNKNT*LSTFLRCELMNSLTFTLTKKFIL 399
            Y L+ +F     TNK + L + L C L N L   + + F+L
Sbjct: 1718 YYLISSFVAISMTNKTSGLPSSLICNLQNFLA-RIARDFLL 1757


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 417 NFRYIHFSLIYYLILWELALVLSFIITFTSVF 512
           N   I ++L+YYLI+    L+ S I  FT  F
Sbjct: 317 NASSIIYTLMYYLIIAPTLLITSAICMFTIFF 348


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 597 KYSKEYNFNQTCSISKLLETKFSI 526
           K+ K+YN    CSI+K+   + SI
Sbjct: 105 KHLKKYNLRSRCSIAKIPSEELSI 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,806,956
Number of Sequences: 5004
Number of extensions: 28650
Number of successful extensions: 72
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)