Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_O03
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     28   1.3  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    27   2.2  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.2  
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch...    27   3.8  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    26   6.7  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   8.9  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   8.9  

>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +1

Query: 178 NKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAESYSVFAELFDPII 315
           N+  S+ +      Q  + +      IY PD   Y ++A LF PI+
Sbjct: 479 NEALSYSNNAFSKSQEALFHPSMVTTIYFPDESKYGIYAPLFAPIL 524


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 203 VDPNEVFLFFRLSNTXPGKVLLQQRLRVG 117
           VDP   F FF +SN   G V+  +RL++G
Sbjct: 365 VDPVSAFRFFEMSNIH-GLVIRNRRLKIG 392


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -1

Query: 557 KVPLSSPSRLDRVPETLSSISLYWDSVRQGLKGYPSSERPQRTRVETTNSPA 402
           K+P S+ SR      TLSS+    D V + L   P ++ P+ + V   NS A
Sbjct: 124 KIPFSASSRASSTKSTLSSVK-ETDFVTETLILSPDNQAPRMSFVGKPNSVA 174


>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
           Tim17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 164

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 677 PVGQKR-QALAACRKRSPSLNRKWSSMSCCWVSFDMPVRG 561
           P G+KR  A+AA + R+P L   +      + +FD  V+G
Sbjct: 43  PPGEKRISAIAAAKTRAPVLGGNFGVWGGLFSTFDCAVKG 82


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 310 IIEDYHNGFKKTDKHPPKNW 369
           I++  ++ FK + KH P+NW
Sbjct: 304 IVQHKNDIFKSSQKHQPRNW 323


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 391 NLDPAGEFVVSTRVRCGRSLEGYPFNPCLTESQYKEMEDKV 513
           N+D A EF++ T      S++G   N C+ +  YK   DKV
Sbjct: 798 NMDFA-EFLIDTNA----SIKGSVVNTCVLDFLYKSFSDKV 833


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = -1

Query: 293 ANTEYDSASGA*IPTPESKFSTPDWMQSRRVDPNEVFLFFRLSNTXPGKVL 141
           ANTE DS+S    P     FS+P      R  P        L    PGK+L
Sbjct: 85  ANTEIDSSSSMLPPPSSDPFSSPLSSSLHRSSPKRP--HDSLGEESPGKLL 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,028
Number of Sequences: 5004
Number of extensions: 50421
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)