Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_O01
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    30   0.31 
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    29   0.72 
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    28   1.3  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    26   5.0  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    25   8.8  

>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
 Frame = -3

Query: 348 NSWSRSPFSKRSARSCGT-PATSCPSNNVC*LRNWHSLFVWITLDTLKKSYSV 193
           +S+S S  S  ++ S  + P  + PS++ C L N +SL +++ ++ LKKS SV
Sbjct: 147 SSYSASETSSVASYSYYSGPNPATPSSSSCNLVNANSLDIYLNINNLKKSKSV 199


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 270 YSRDKMSPVCHSFVQNAWK-KDFCSNCFKSREEHVKQ 377
           +S   MSPV H F+   W+  D   NCF+  E  +++
Sbjct: 435 HSEKMMSPVFHQFLDCVWQIMDQFPNCFEFNERFLRR 471


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 32  RPLSRQHVSICDVKNNKCYENPDDNSVVV 118
           RP +RQ  S+ DV N   Y N   NSV V
Sbjct: 126 RPHTRQSFSVSDVSNGSSYPNIRKNSVHV 154


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 282 KMSPV-CHSFVQNAWKKDFCSNCFKSREEHVKQERVSE 392
           K++P+  H +VQ AW K    +  KS E  +K E + E
Sbjct: 253 KITPIFLHEYVQEAWYKLEPLDLTKSLEGEIKVETIYE 290


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 415 HSRTEVHSLRKLHRAY*RSIQRKRINVM*VFQMKSVVLLVL 537
           H   + H LR  H A+ R I R+R +   +F    + L VL
Sbjct: 19  HQDPDWHKLRNYHGAWYRRISRRRFSQF-IFAFGLMTLFVL 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,039,930
Number of Sequences: 5004
Number of extensions: 60342
Number of successful extensions: 181
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)