Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_O01
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0160 - 21388993-21389049,21389117-21389245,21389743-21389793     31   0.75 
04_04_0656 - 26988766-26988830,26989311-26989371,26989514-269895...    31   0.99 
01_06_1025 + 33904633-33904942,33905035-33905063                       31   1.3  
01_01_0600 - 4450664-4450758,4450909-4450960,4451348-4451371,445...    30   2.3  
04_01_0579 - 7515242-7516241,7516366-7516393,7516574-7516631           29   3.0  
06_03_0072 - 16223152-16223987,16224394-16224981,16225941-16226268     28   7.0  

>03_05_0160 - 21388993-21389049,21389117-21389245,21389743-21389793
          Length = 78

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -2

Query: 490 LFFFFEWIFSMLGGVFLKNVL--LFWNGVAKYLLPSLTRS 377
           L F+   IF M+ GVFL+N+L  +F+      LL  L+R+
Sbjct: 28  LSFYMNTIFKMVNGVFLRNILFKIFFKNQINLLLRHLSRN 67


>04_04_0656 -
           26988766-26988830,26989311-26989371,26989514-26989588,
           26989694-26989849,26989975-26990061,26990140-26990340,
           26990942-26991043,26991223-26991374,26991488-26991557,
           26991646-26991765,26992708-26992761
          Length = 380

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = +3

Query: 363 EHVKQERVSEGSKYLATPFQNRSTFFKKTPPSILKIHSKKKNKRNVSFPDEVSSVIGFGG 542
           +H++QE VSE  K  A P  +   +  + PPS  +++    +    S  D V+SV  F G
Sbjct: 257 DHLEQEMVSERQKIEAPPTPSAENYMAQPPPSYDEVNGMFASS---SVDDSVTSVDFFLG 313

Query: 543 ---DGWSDDEEFEMS 578
              D +  + E E++
Sbjct: 314 EALDSFKAESESELN 328


>01_06_1025 + 33904633-33904942,33905035-33905063
          Length = 112

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 22/70 (31%), Positives = 30/70 (42%)
 Frame = +3

Query: 252 YVINRRYSRDKMSPVCHSFVQNAWKKDFCSNCFKSREEHVKQERVSEGSKYLATPFQNRS 431
           YV+N    + + S  C S +Q A     CS   K  E+ V  E+V   + Y   P Q  S
Sbjct: 41  YVMNPANPKIEPSNACCSVIQKANVPCLCSKVTKEIEKIVCMEKVVYVADYCKKPLQPGS 100

Query: 432 TFFKKTPPSI 461
                T PS+
Sbjct: 101 KCGSYTIPSL 110


>01_01_0600 -
           4450664-4450758,4450909-4450960,4451348-4451371,
           4451450-4451483,4454141-4454209,4454816-4454943,
           4455088-4455196,4455558-4455677,4455888-4456084
          Length = 275

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
 Frame = -1

Query: 437 ECTSVLEWSS*ILATLADSFLLDVFLARLETVGAEVLFPSVLHEAVAHRRHLVPRITSVD 258
           EC  +LE  S  ++  +D+ L DV        GA+    S++H  V   ++       + 
Sbjct: 131 ECLEILEVHSREVSLASDASLEDVASLTERFTGADPSLASLVHMPVVFSKN------QLL 184

Query: 257 YVTGILYSSG*RWI--PLKRVTP*ECLVTFSQVKVHFGVSPVFKNTSRIPQHC 105
           + T ++Y+S  R +  PLK +    C +  S V V F +  +F    R   HC
Sbjct: 185 HFTWLVYNSSVRTVRQPLKNLKD-RCYLELSAVVVRFKLI-LFTTVQRRYLHC 235


>04_01_0579 - 7515242-7516241,7516366-7516393,7516574-7516631
          Length = 361

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +1

Query: 520 VVLLVLEAMDGRMMRNSKCQKTMKTMTLSPILRRRENFTESQSPIQILTQSKPIC 684
           V+ LV+  + G  +  +  +K  +   ++ IL R  NF     P + L    P+C
Sbjct: 10  VIFLVITKIAGNRISKNSNRKYTRRRRVNTILYRNRNFNPQSHPSRRLRIQSPVC 64


>06_03_0072 - 16223152-16223987,16224394-16224981,16225941-16226268
          Length = 583

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 178 LSVK*KCTSAFLLCLKTLHEYHNTVIIRIFV 86
           L+ K K +S  ++C   L++YH T+I+ + +
Sbjct: 460 LADKYKTSSFAMVCCSKLNQYHKTIIVHLLI 490


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,072,590
Number of Sequences: 37544
Number of extensions: 362919
Number of successful extensions: 980
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)