Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_O01
         (755 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB189741-1|BAD89507.1| 1036|Homo sapiens Rho interacting protein...    34   0.64 
AB098507-1|BAC78198.1| 1037|Homo sapiens Rho-interacting protein...    34   0.64 
AY296247-1|AAQ63176.1| 1024|Homo sapiens myosin phosphatase-Rho ...    33   0.84 
AY072770-1|AAL67136.1|  492|Homo sapiens zinc finger protein ZFX...    31   5.9  

>AB189741-1|BAD89507.1| 1036|Homo sapiens Rho interacting protein
           protein.
          Length = 1036

 Score = 33.9 bits (74), Expect = 0.64
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 273 SRDKMSPVCHSFVQNAWKKDFCSNCFKSREEHV 371
           S  K +P C  F  N + K  C NCFK RE H+
Sbjct: 2   SAAKENP-CRKFQANIFNKSKCQNCFKPRESHL 33


>AB098507-1|BAC78198.1| 1037|Homo sapiens Rho-interacting protein 3
           protein.
          Length = 1037

 Score = 33.9 bits (74), Expect = 0.64
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 273 SRDKMSPVCHSFVQNAWKKDFCSNCFKSREEHV 371
           S  K +P C  F  N + K  C NCFK RE H+
Sbjct: 2   SAAKENP-CRKFQANIFNKSKCQNCFKPRESHL 33


>AY296247-1|AAQ63176.1| 1024|Homo sapiens myosin phosphatase-Rho
           interacting protein protein.
          Length = 1024

 Score = 33.5 bits (73), Expect = 0.84
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 273 SRDKMSPVCHSFVQNAWKKDFCSNCFKSREEHV 371
           S  K +P C  F  N + K  C NCFK RE H+
Sbjct: 2   SAAKENP-CRKFQANIFNKSKCQNCFKPREPHL 33


>AY072770-1|AAL67136.1|  492|Homo sapiens zinc finger protein ZFX
           isoform 4 protein.
          Length = 492

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +3

Query: 336 CSNCFKSREEHVKQERVSEGSKYLATPFQNRSTFFKKTPPSILKIHSKKKNKRNVSFPDE 515
           C   F+   E  K  R+  G K    P+Q +   ++   PS LK H K K+ + + F  +
Sbjct: 240 CGKGFRHPSELKKHMRIHTGEK----PYQCQYCEYRSADPSNLKTHVKTKHSKEMPFKCD 295

Query: 516 V 518
           +
Sbjct: 296 I 296


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,546,984
Number of Sequences: 237096
Number of extensions: 2118238
Number of successful extensions: 5176
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5166
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9127122082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)