Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_N24
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple...    74   1e-14
SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|...    26   4.9  
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    26   4.9  
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    25   6.5  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    25   6.5  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    25   6.5  

>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
           subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 74.1 bits (174), Expect = 1e-14
 Identities = 47/132 (35%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
 Frame = +1

Query: 211 LYNYPTICLAVYRELPELARHFVIRLLFVEQPVPQAVVTSWVSQTYAKEQAKACTTLSEL 390
           LY  P  CLAV+R LP LAR +V+ +LF   PV  +    W+  +    Q+++   L  +
Sbjct: 22  LYQKPAACLAVFRLLPILARQYVMSMLFNPMPVALSDFDLWIKLSSKVYQSESFNKLVRM 81

Query: 391 SVWQEAPIPGGMPGWMLAQSFKKNLKVSLLGGGRAWSMS-SSLEPDGKARDVSFLDAYAL 567
            ++Q     G      L   F+K    +L GGG   S      + D     V FLDAYA 
Sbjct: 82  HIFQ---FDGQY--ITLNSEFRKQFITALTGGGNHNSFGVPCTDEDKHLVTVDFLDAYAK 136

Query: 568 ERWECVLHYMVG 603
           E WE +LH+MVG
Sbjct: 137 ETWETILHFMVG 148


>SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 204 RDSLQLPHYMSRCISRITRASTSLRNPLAVR*AASPTGSC 323
           +D  +LP Y  R I++   A   +RN L  +   S TG C
Sbjct: 29  KDECRLPSYSERAITKPVEARKLIRNRLMTK---STTGWC 65


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 307 VPQAVVTSWVSQTYAKEQAKACTTLSEL 390
           +PQ  VT W  +TY K+ ++  +T+SE+
Sbjct: 27  IPQKEVTEWFRKTYNKDLSQ--STISEI 52


>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 214 YNYPTICLAVYRELPELARHF 276
           +N+P  CL   RE+ +L RHF
Sbjct: 73  FNHPVFCLRTLREI-KLLRHF 92


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 418 GGMPGWMLAQSFKKNLKVSLLGGGRA 495
           G  P W L+ S++K+L +  LGG  A
Sbjct: 355 GYTPSWALSWSYRKDLIMQELGGYNA 380


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 578 SQRSSAYASRNDTSRAFPSGSSDDD 504
           + RSS+Y+ R D+ R+  S + DDD
Sbjct: 255 ADRSSSYSRRGDSYRSNRSRAHDDD 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,275,868
Number of Sequences: 5004
Number of extensions: 46695
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)