Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_N24
(611 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1609 + 34760576-34760688,34760781-34760948,34761566-347616... 67 1e-11
03_01_0039 - 348800-348912,349201-349279,349513-349687,350126-35... 36 0.019
09_02_0236 - 6131072-6131639,6132047-6132180 35 0.058
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 34 0.077
07_03_0682 + 20667365-20667655 33 0.13
06_01_1161 - 9872947-9873800,9874187-9874331,9874628-9874681 31 0.72
03_02_0790 - 11212540-11212698,11212777-11212873,11212974-112130... 31 0.72
01_05_0788 + 25223373-25223405,25224285-25224373,25224496-252246... 31 0.72
10_07_0138 + 13325418-13325954 30 1.3
02_04_0228 - 21083917-21084067,21084489-21084577,21084662-210847... 29 2.2
01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078 29 2.9
06_03_0559 + 22148773-22149210,22149478-22149684,22150065-221504... 29 3.8
05_07_0035 - 27221338-27221433,27221510-27221599,27222056-272221... 29 3.8
08_02_0828 - 21596570-21597337 28 5.1
02_05_0544 + 29876337-29876524,29876850-29876882,29878390-298785... 28 5.1
09_02_0461 + 9577003-9577065,9577471-9577568,9578339-9578394,957... 28 6.7
05_07_0260 - 28739035-28739085,28739316-28739596,28740545-287405... 28 6.7
04_04_0919 - 29422003-29422267,29422411-29422660,29423163-294234... 28 6.7
04_01_0208 + 2596110-2596928 28 6.7
03_05_0319 - 23064997-23065443 28 6.7
03_05_0317 - 23056409-23056855 28 6.7
02_05_0186 + 26569594-26570271 28 6.7
08_02_0847 - 21828372-21828545,21829043-21829206,21829831-218299... 27 8.9
02_01_0243 - 1601977-1602834,1602857-1603063 27 8.9
>04_04_1609 +
34760576-34760688,34760781-34760948,34761566-34761634,
34762125-34762247,34762296-34762501,34762723-34762729,
34762961-34763006,34763092-34763151,34763249-34763317,
34763790-34763873,34764178-34764263,34764859-34764949,
34765029-34765109,34765191-34765265,34765392-34765526
Length = 470
Score = 66.9 bits (156), Expect = 1e-11
Identities = 38/126 (30%), Positives = 63/126 (50%)
Frame = +1
Query: 202 LETLYNYPTICLAVYRELPELARHFVIRLLFVEQPVPQAVVTSWVSQTYAKEQAKACTTL 381
L+ LY+ IC AV R LP LA+ + +++L+V PV A + WV YA + A L
Sbjct: 23 LDMLYDSAFICEAVLRSLPPLAKKYALQMLYVSAPVAAAAMEEWVLDEYAAKHRVAIDRL 82
Query: 382 SELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLLGGGRAWSMSSSLEPDGKARDVSFLDAY 561
+L V+ E + + Q F+ N++ L+ GG + ++ L+++
Sbjct: 83 LQLRVFVEVRDRRKEVSYKMNQKFQGNMQKYLVDGGSLPREPIPSSVTARLPTLAELESF 142
Query: 562 ALERWE 579
ALE+WE
Sbjct: 143 ALEQWE 148
>03_01_0039 -
348800-348912,349201-349279,349513-349687,350126-350232,
350294-350374,350783-351082,351178-351230,351357-351494,
351767-351917,352602-352809,352881-352939
Length = 487
Score = 36.3 bits (80), Expect = 0.019
Identities = 25/68 (36%), Positives = 32/68 (47%)
Frame = -1
Query: 587 STHSQRSSAYASRNDTSRAFPSGSSDDDMLHALPPPSNDTLRFFLNDCASIQPGMPPGMG 408
S S A AS + F S DD++L LP P+ D RF L+D +S + P
Sbjct: 50 SQQSFSQGASASLLHSQSQFSQVSLDDNLLTLLPSPTRDQ-RFGLHDDSSKRMSSLPASS 108
Query: 407 ASCHTESS 384
ASC E S
Sbjct: 109 ASCAREES 116
>09_02_0236 - 6131072-6131639,6132047-6132180
Length = 233
Score = 34.7 bits (76), Expect = 0.058
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Frame = +2
Query: 362 QKHALHCQSSPCGRRPPYRGA--------CRAGCSHSRLKRTSKCHCLGEAGRGACRRRW 517
++HA+H Q P PP GA CR C R+ R K G G RRRW
Sbjct: 126 RRHAIHLQPPP-PLPPPPEGAFAAGSARRCRRHCHRRRIHRRRKVR-----GGGGSRRRW 179
Query: 518 SRTGRPGTCRSWTRTRWSAGSA 583
+R P + T AGSA
Sbjct: 180 TRLPPPDLPAAATDAATVAGSA 201
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 34.3 bits (75), Expect = 0.077
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = -3
Query: 510 RRHAPRPASPKQ*HFEVLFKRLCEHPARHAPRYGGLLPHGEL 385
RRH+ RP K+ F+ L KR+ E HA R G+LP G L
Sbjct: 599 RRHSGRPGGMKEETFDQLQKRIPERIIEHAVR--GMLPKGRL 638
>07_03_0682 + 20667365-20667655
Length = 96
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 434 GCSHSRLKRTSKCHCLGEAGRGACRRRWSRTGRPGTCRS 550
G S +R + + G + R RRW R GRPG CRS
Sbjct: 22 GQSQTRRRPVVEARQGGGSRRRRTERRWGRDGRPGRCRS 60
>06_01_1161 - 9872947-9873800,9874187-9874331,9874628-9874681
Length = 350
Score = 31.1 bits (67), Expect = 0.72
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -1
Query: 524 SGSSDDDMLHALPPPSNDTLRFFLNDCASIQPGMPPGMGASCHTESSDSVVHA 366
SGS + + AL DT RF ++ + PG + CH S DSV+ A
Sbjct: 281 SGSGTPEKMEALAVCHLDTSRFDPKTPLFVEHNLRPGDASVCHFVSRDSVIWA 333
>03_02_0790 -
11212540-11212698,11212777-11212873,11212974-11213030,
11213291-11213379,11213463-11213549,11213820-11213935,
11214026-11214281,11214361-11214510,11214948-11215106,
11215456-11215493,11215972-11216063,11216528-11216682,
11217185-11217253
Length = 507
Score = 31.1 bits (67), Expect = 0.72
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 325 TSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWML 441
TSW+ T+ + T +S+ +W + +P G P W+L
Sbjct: 398 TSWIPITWLGKITLE-TYISQFHIWLRSKVPNGQPKWLL 435
>01_05_0788 +
25223373-25223405,25224285-25224373,25224496-25224624,
25224710-25224766,25224844-25224916,25225509-25225667,
25226755-25226904,25227013-25227268,25227358-25227479,
25227531-25227599,25227653-25227739,25227842-25227930,
25228168-25228224,25229162-25229258,25229348-25229506
Length = 541
Score = 31.1 bits (67), Expect = 0.72
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 325 TSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLA 444
TSW+ T+ + T +S++ +W + +P G P W+L+
Sbjct: 432 TSWIPITWLGKITLE-TYISQIHIWLRSNMPNGQPKWLLS 470
>10_07_0138 + 13325418-13325954
Length = 178
Score = 30.3 bits (65), Expect = 1.3
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 401 RRPPYRGACRAGCSHSRLKRTSKCHCLGEAGRGACRRRWSRTGRPGTC-RSWTRTRWSAG 577
R P RGA R CS R +R+ + R C RRW R+ R C R W R W++G
Sbjct: 77 RLPDLRGARR--CSR-RWRRSRRW-------RSRCSRRWRRSWRRRRCSRRWRRL-WTSG 125
Query: 578 SA 583
A
Sbjct: 126 DA 127
>02_04_0228 -
21083917-21084067,21084489-21084577,21084662-21084731,
21084747-21084823,21084954-21085337,21085420-21085760,
21085869-21085950,21086033-21086391,21087084-21087204,
21087427-21087512,21088896-21088944,21089262-21089275,
21089467-21089545
Length = 633
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 509 DDMLHALPPPSNDTLRFFLNDCAS 438
+D++H PP S +TL+ F+ D S
Sbjct: 187 EDLIHRRPPVSRNTLKIFIRDATS 210
>01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078
Length = 455
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 464 SKCHCLGEAGRGACRRRWSRTGRPGTCRSWTRTRWSAGSA 583
+KC G AG G+ +R+G G CRSW W A +A
Sbjct: 35 AKCGGSGSAGGGSGPVA-ARSG--GACRSWQEAAWEAATA 71
>06_03_0559 +
22148773-22149210,22149478-22149684,22150065-22150471,
22150655-22151472,22151564-22151674,22151846-22152015
Length = 716
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +1
Query: 322 VTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLL-GGGRAW 498
+++W +Q+ A A A + + + +AP+ G PG + +F + LL G GR
Sbjct: 9 LSTWATQSSASGPATAPSAGASFDLNSQAPVAEGFPGLGMYGAFLQGDDDELLTGHGRGS 68
Query: 499 SMSSSLEPDGKARD 540
S+ P A D
Sbjct: 69 SLPPYRPPRAGAGD 82
>05_07_0035 -
27221338-27221433,27221510-27221599,27222056-27222115,
27222231-27222523,27222601-27222757,27222917-27223261,
27223890-27224020,27224119-27224596,27224817-27225563
Length = 798
Score = 28.7 bits (61), Expect = 3.8
Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Frame = -1
Query: 569 SSAYASRNDTSRAFPSGSSDDDMLHALPPPSNDTLRFFLNDCASIQPGM-PPGMGASCHT 393
SS +AS + ++ A S SS A P P+ +L P PP A T
Sbjct: 29 SSRHASSSSSTTAAASSSSSSGGNRAPPAPNPTRGAPWLQKWGPTDPAAPPPPPPAPSPT 88
Query: 392 ESSDSVVHAFACSLAYVCETQDVTTACGT 306
S D +VH +L + + T A T
Sbjct: 89 SSIDRIVHRLR-NLGLASDDDEPTAAAAT 116
>08_02_0828 - 21596570-21597337
Length = 255
Score = 28.3 bits (60), Expect = 5.1
Identities = 24/85 (28%), Positives = 32/85 (37%)
Frame = +2
Query: 332 GSRRHMPKNKQKHALHCQSSPCGRRPPYRGACRAGCSHSRLKRTSKCHCLGEAGRGACRR 511
GS + A+ C++ C R ++ G + S TS G GR
Sbjct: 73 GSAASSSSSSSGSAIPCRADACERWDAHKNKKAGGSAAS--SSTSSRASGGSPGRADSCE 130
Query: 512 RWSRTGRPGTCRSWTRTRWSAGSAC 586
RW PG+ S T S GSAC
Sbjct: 131 RWDAHKTPGSPASST---GSNGSAC 152
>02_05_0544 +
29876337-29876524,29876850-29876882,29878390-29878577,
29879755-29879811,29879909-29880061,29880812-29881278,
29881477-29881635,29881718-29881834,29881966-29882117,
29883436-29883530,29883619-29884525,29884604-29884688,
29884775-29884843,29885045-29885224,29885367-29885495
Length = 992
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -3
Query: 456 FKRLCEHPA--RHAPRYGGLLPHGEL*QCSACFCLFFGICLRDPGCDNCLWDWLLNEQ 289
FKRLCE+ R P L P+ + C G+ R +NC DWLL +
Sbjct: 77 FKRLCEYQTGKRSNPCPRSLPPNAVMGLALTRDCRGSGLLKRCYALENCGQDWLLGRR 134
>09_02_0461 +
9577003-9577065,9577471-9577568,9578339-9578394,
9578446-9578672,9578956-9579045
Length = 177
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 334 VSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNL--KVSLLGGGRAWSM 504
V++T KE KA L W PGG P WM+ +N+ + +L G W++
Sbjct: 27 VTRTKYKEPTKA------LIYWPNLSNPGGNPAWMMLLLLMENILFDMIVLAGMGLWTL 79
>05_07_0260 -
28739035-28739085,28739316-28739596,28740545-28740572,
28740653-28740749,28741216-28741272,28741353-28741415,
28741533-28741621,28741779-28741865,28742041-28742162,
28742245-28742500,28742595-28742744,28743120-28743278,
28743820-28743892,28743968-28744024,28744115-28744243,
28744469-28744560,28745220-28745252
Length = 607
Score = 27.9 bits (59), Expect = 6.7
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +1
Query: 373 TTLSELSVWQEAPIPGGMPGWMLA 444
T +S++ +W + P G P W+L+
Sbjct: 446 TYISQIHIWLRSSTPNGQPKWLLS 469
>04_04_0919 -
29422003-29422267,29422411-29422660,29423163-29423481,
29423625-29424794,29424879-29425388,29425449-29425607
Length = 890
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -2
Query: 415 VWGPPATRRALTV*CMLLLVLWHMSARPRM*QL---PVGLAAQRTASGL 278
+WGPP T + T+ +LL+++ +++ R L P A + AS L
Sbjct: 283 IWGPPGTGKTKTISVLLLMLMTTATSQSRYRVLTCAPTNTAISQVASRL 331
>04_01_0208 + 2596110-2596928
Length = 272
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 416 RGACRAGCSHSRLKRTSKCHCLGEAGRGACRRRWSRTGR 532
RG R + +RL+R S C G G RRRW R R
Sbjct: 149 RGGKRRAMAGTRLRR-SPCETEGRPGWRRWRRRWRRRRR 186
>03_05_0319 - 23064997-23065443
Length = 148
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 494 RGACRRRWSRTGRPGTCRSWTRTRWSAGSAC 586
R A RRRW + R G C S T + WS C
Sbjct: 11 RMAGRRRWLKRRRSGAC-SRTLSAWSRSRRC 40
>03_05_0317 - 23056409-23056855
Length = 148
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 494 RGACRRRWSRTGRPGTCRSWTRTRWSAGSAC 586
R A RRRW + R G C S T + WS C
Sbjct: 11 RMAGRRRWLKRRRSGAC-SRTLSAWSRSRRC 40
>02_05_0186 + 26569594-26570271
Length = 225
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Frame = -1
Query: 557 ASRNDTSRAFPSGSSDDDMLHALPPPSNDTLRFFLNDCASIQPGM---PPGMGASCHTES 387
+S N + P GS D A PPP D L D + + PP G SC +
Sbjct: 138 SSANAGASNNPDGSDDASAGSASPPPPPDAADDALFDLPDLLLDLRYGPPSSGLSCASSW 197
Query: 386 SDSV 375
D V
Sbjct: 198 EDEV 201
>08_02_0847 -
21828372-21828545,21829043-21829206,21829831-21829967,
21830909-21831241,21832067-21833244
Length = 661
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -1
Query: 584 THSQRSSAYASRNDTSRAFPSGSSDDDMLHALPPPSNDTLRFFLNDCASIQPGMP 420
T ++S A A DTS PSG++D D + + FLN +S Q G+P
Sbjct: 587 TTIEKSFARAPHPDTSNEGPSGAADTDGEMTPVDVDLNLVESFLNSYSS-QQGLP 640
>02_01_0243 - 1601977-1602834,1602857-1603063
Length = 354
Score = 27.5 bits (58), Expect = 8.9
Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Frame = +2
Query: 425 CRAGC-SHSRLKRTSKCHCLGE---AGRGACRRRWSRTGRPGTCRSWTRTRWSA 574
C A C S S T+ C G A AC R G CR W R R SA
Sbjct: 83 CGATCASASAAPATASCCSSGTRAAAATAACSSATRRRGSWSICRRWKRLRPSA 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,187,178
Number of Sequences: 37544
Number of extensions: 394487
Number of successful extensions: 1498
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1498
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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