Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_N24
(611 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132862-18|CAB70230.2| 481|Caenorhabditis elegans Hypothetical... 40 0.002
M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein. 31 0.86
AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical ... 31 0.86
Z67754-1|CAA91751.1| 483|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z81584-7|CAE17905.1| 202|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 27 8.0
AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ... 27 8.0
>AL132862-18|CAB70230.2| 481|Caenorhabditis elegans Hypothetical
protein Y73F8A.24 protein.
Length = 481
Score = 39.5 bits (88), Expect = 0.002
Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 1/143 (0%)
Frame = +1
Query: 172 EYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVIRLLFVEQPVPQAVVTSWVSQTYA 351
++L + P+ + L P+ +YR LP +A+ I+L++ + P A S V +T
Sbjct: 25 DFLITIPPKTRQRLLQKPSCAFFIYRMLPPIAQQTTIQLIW-KGSFPTA---SDVEET-- 78
Query: 352 KEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKN-LKVSLLGGGRAWSMSSSLEPDG 528
KE L +L + G + + +K++ + ++LG + S+ LEP+
Sbjct: 79 KEIEDQVKLLKDLGLVHRQTTDGKLN---IDTDYKRSYMYAAMLGAAQISSLV--LEPNE 133
Query: 529 KARDVSFLDAYALERWECVLHYM 597
R ++ A+ERW+C+L Y+
Sbjct: 134 GNRRGKDVEKKAVERWDCILRYL 156
>M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.
Length = 1110
Score = 30.7 bits (66), Expect = 0.86
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 584 THSQRSSAYASRNDTSRAFPSGSSDDDMLHALPPP 480
TH+ S+ + + +F S +DD ++ALPPP
Sbjct: 1046 THADNSALQLQQEQPTSSFSSWFPEDDPIYALPPP 1080
>AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical
protein Y47D3A.6a protein.
Length = 1109
Score = 30.7 bits (66), Expect = 0.86
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 584 THSQRSSAYASRNDTSRAFPSGSSDDDMLHALPPP 480
TH+ S+ + + +F S +DD ++ALPPP
Sbjct: 1045 THADNSALQLQQEQPTSSFSSWFPEDDPIYALPPP 1079
>Z67754-1|CAA91751.1| 483|Caenorhabditis elegans Hypothetical
protein C34E11.1 protein.
Length = 483
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = -1
Query: 578 SQRSSAYASRNDTSRAFPSGSSDDDMLHALPPPSNDTLRFFLNDCASIQPGMPPGM 411
S RSS A+ N S+ PS S DD + A+PPPS + + + P M
Sbjct: 266 SSRSSQPAATNK-SKPNPSKSFFDDPIPAIPPPSGAPSNYVAPPLSPVSKNAPRNM 320
>Z81584-7|CAE17905.1| 202|Caenorhabditis elegans Hypothetical
protein T04C12.7 protein.
Length = 202
Score = 29.9 bits (64), Expect = 1.5
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Frame = -1
Query: 527 PSGSSDDDMLHALPPPSNDTLRF-FLNDCASIQPGMPPGMGASCHTESSDSVVH--AFAC 357
P S++ D+ +A P + RF F C I G+ M + E+ D++ + AF+
Sbjct: 97 PQTSTETDIKNATPLKMHRISRFTFCCLCMCIPIGILWTMQIYDNHENCDNLTYWTAFSV 156
Query: 356 SLAYVCETQDVTTACGTG-CSTNSKRITK 273
S+ Y+C + + C G C + R++K
Sbjct: 157 SILYLCWMCLMVSVCLLGCCMVGASRVSK 185
>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical protein
F22E10.2 protein.
Length = 1324
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 238 AVYRELPELARHFVIRLLFVEQPVPQAVVTSWVSQT-YAKEQAKACTTLSELSVWQEA 408
A Y + P A +I L + P +AVV + Q YA AC T+ ++ WQ A
Sbjct: 852 AAYFDNPAHAPGSLITRLAADPPCVKAVVDGRMMQVVYATAAVIACVTIGFINCWQVA 909
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +2
Query: 491 GRGACRRRWSRTGRPGTCRSWTRTRWSAGSACC 589
G + R +T GTC W T WSA S C
Sbjct: 1224 GTASDRPASHQTCNLGTCPFWRNTDWSACSVSC 1256
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +2
Query: 491 GRGACRRRWSRTGRPGTCRSWTRTRWSAGSACC 589
G + R +T GTC W T WSA S C
Sbjct: 1224 GTASDRPASHQTCNLGTCPFWRNTDWSACSVSC 1256
>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
protein F52G3.1 protein.
Length = 1172
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Frame = -1
Query: 485 PPSNDTLR-----FFLNDCASIQPGMPPGMGASCHTESSDSV 375
PPSN T FF N+ G PPG+ A+ H+ D +
Sbjct: 1062 PPSNGTSHQDNGPFFFNNGNRAPIGRPPGLSAAGHSAQLDMI 1103
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,091,006
Number of Sequences: 27780
Number of extensions: 300985
Number of successful extensions: 965
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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