Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_N24
(611 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 23 2.4
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 22 4.1
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 4.1
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 4.1
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 22 5.4
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 22 5.4
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 22 5.4
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 22 5.4
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 22 5.4
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 22 5.4
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 9.5
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 21 9.5
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 23.0 bits (47), Expect = 2.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 600 HHVVQHALPALQRVRVQERHVPGLPVRLQRRRHAPR 493
HH +Q+ LQ VQ+ H P + Q++R R
Sbjct: 141 HHHLQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQR 176
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 22.2 bits (45), Expect = 4.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 400 QEAPIPGGMPGWMLAQSFKKN 462
+E P PG +PG + QSF KN
Sbjct: 23 KEEPGPG-LPGQEVKQSFLKN 42
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 22.2 bits (45), Expect = 4.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 400 QEAPIPGGMPGWMLAQSFKKN 462
+E P PG +PG + QSF KN
Sbjct: 23 KEEPGPG-LPGQEVKQSFLKN 42
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 22.2 bits (45), Expect = 4.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 400 QEAPIPGGMPGWMLAQSFKKN 462
+E P PG +PG + QSF KN
Sbjct: 23 KEEPGPG-LPGQEVKQSFLKN 42
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 5.4
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +2
Query: 440 SHSR-LKRTSKCHCLGEAGRGACRRRWSRTGRPGTCRSWTR 559
S SR +RTS CH E R R + G R +R
Sbjct: 219 SRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSR 259
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 5.4
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +2
Query: 440 SHSR-LKRTSKCHCLGEAGRGACRRRWSRTGRPGTCRSWTR 559
S SR +RTS CH E R R + G R +R
Sbjct: 219 SRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSR 259
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 5.4
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +2
Query: 440 SHSR-LKRTSKCHCLGEAGRGACRRRWSRTGRPGTCRSWTR 559
S SR +RTS CH E R R + G R +R
Sbjct: 219 SRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSR 259
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 5.4
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +2
Query: 440 SHSR-LKRTSKCHCLGEAGRGACRRRWSRTGRPGTCRSWTR 559
S SR +RTS CH E R R + G R +R
Sbjct: 219 SRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSR 259
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 21.8 bits (44), Expect = 5.4
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +2
Query: 440 SHSR-LKRTSKCHCLGEAGRGACRRRWSRTGRPGTCRSWTR 559
S SR +RTS CH E R R + G R +R
Sbjct: 219 SRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSR 259
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 21.8 bits (44), Expect = 5.4
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +2
Query: 440 SHSR-LKRTSKCHCLGEAGRGACRRRWSRTGRPGTCRSWTR 559
S SR +RTS CH E R R + G R +R
Sbjct: 219 SRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSR 259
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.0 bits (42), Expect = 9.5
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +2
Query: 386 SSPCGRRPPYRGACRAGCSHSRLKRTSKCH 475
S CGRRP G+ KR K H
Sbjct: 44 SGYCGRRPSTFGSSNEALPQPISKRKDKEH 73
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 21.0 bits (42), Expect = 9.5
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +2
Query: 386 SSPCGRRPPYRGACRAGCSHSRLKRTSKCH 475
S CGRRP G+ KR K H
Sbjct: 44 SGYCGRRPSTFGSSNEALPQPISKRKDKEH 73
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,476
Number of Sequences: 438
Number of extensions: 3437
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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