Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_N14
         (433 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1460 - 37519393-37519591,37519724-37519746,37519843-37519905     62   1e-10
09_02_0168 - 5253588-5254688                                           43   1e-04
03_02_0188 + 6251256-6251561                                           38   0.005
12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837           28   3.7  
05_03_0414 + 13650483-13651388,13651559-13651657                       27   4.9  
04_01_0600 + 7907142-7908047,7908218-7908316                           27   4.9  
06_01_0815 + 6166861-6166953,6167074-6167173,6168569-6168639,616...    27   6.5  
09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959           27   8.6  
02_05_0810 - 31934965-31935013,31935096-31935217,31935328-319355...    27   8.6  

>01_06_1460 - 37519393-37519591,37519724-37519746,37519843-37519905
          Length = 94

 Score = 62.5 bits (145), Expect = 1e-10
 Identities = 31/61 (50%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
 Frame = +3

Query: 108 VTDESDGCGAKFSVLIVSDKFKGKPLLARHRLVNTLLQEELKTIHAFT-QKTLTVDQWKT 284
           VTD S GCGA + + +VS+KF+GK LL RHR+VNT L   +  IHA + +K LT  Q + 
Sbjct: 23  VTDTSGGCGASYEIEVVSEKFEGKRLLERHRMVNTALAPHMAEIHAVSIKKALTPAQAQP 82

Query: 285 Q 287
           Q
Sbjct: 83  Q 83


>09_02_0168 - 5253588-5254688
          Length = 366

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 21/38 (55%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
 Frame = +3

Query: 141 FSVLIVSDKFKGKPLLARHRLVNTLLQEELKT-IHAFT 251
           F+V +VS+ F+GK LL RHR V  LLQ+ELK  +HA +
Sbjct: 320 FNVRVVSEAFQGKSLLKRHRAVYDLLQDELKNGLHALS 357


>03_02_0188 + 6251256-6251561
          Length = 101

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 16/38 (42%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
 Frame = +3

Query: 141 FSVLIVSDKFKGKPLLARHRLVNTLLQEELKT-IHAFT 251
           F++ ++S KF+G+ L+ RHR+V  LL +EL + +HA +
Sbjct: 53  FNIRVISPKFEGQSLVKRHRMVYDLLTDELNSGLHAIS 90


>12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837
          Length = 364

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 90  KCSIEEVTDESDGCGAKFSVLIVSD 164
           +CS   VT  +DGC AK SV  ++D
Sbjct: 216 QCSFRPVTCPNDGCRAKVSVRCMTD 240


>05_03_0414 + 13650483-13651388,13651559-13651657
          Length = 334

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 90  KCSIEEVTDESDGCGAKFSVLIVSD 164
           +CS   VT  +DGC AK SV  + D
Sbjct: 187 QCSFRPVTCPNDGCRAKVSVRCMQD 211


>04_01_0600 + 7907142-7908047,7908218-7908316
          Length = 334

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 90  KCSIEEVTDESDGCGAKFSVLIVSD 164
           +CS   VT  +DGC AK SV  + D
Sbjct: 187 QCSFRPVTCPNDGCRAKVSVRCMQD 211


>06_01_0815 +
           6166861-6166953,6167074-6167173,6168569-6168639,
           6169873-6170064,6170168-6170290
          Length = 192

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 93  CSIEEVTDESDGCGAKFSVLIVSDKFKGKP 182
           C+ EEV    + CG    V I++DKF G+P
Sbjct: 93  CTPEEVQQHFNSCGTVNRVTILTDKF-GQP 121


>09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959
          Length = 708

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 69  ISLSLTNTIGQRAAAVARRLTPT 1
           + L+LTN +GQ    VARR  PT
Sbjct: 442 VLLNLTNKVGQTPLDVARRKIPT 464


>02_05_0810 -
           31934965-31935013,31935096-31935217,31935328-31935519,
           31937689-31937759,31938708-31938819,31938911-31939015
          Length = 216

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 93  CSIEEVTDESDGCGAKFSVLIVSDKFKGKP 182
           C+ EEV      CG    V I++DKF G+P
Sbjct: 101 CTPEEVQQHFQACGTVNRVTILTDKF-GQP 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,448,760
Number of Sequences: 37544
Number of extensions: 151506
Number of successful extensions: 322
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)