Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_N14
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   2.6  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   7.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   7.8  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 134 AASVALICHLL 102
           AASV LICH+L
Sbjct: 286 AASVNLICHIL 296


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 237 LSSVPLEAMCSPIYAWQE 184
           ++  PLE MC P  + +E
Sbjct: 106 ITKAPLECMCRPCTSVEE 123


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 133 PHPSLSSVTSSIEHFQIF 80
           PH + SS ++S +H++ F
Sbjct: 32  PHSAESSASNSPDHYERF 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,477
Number of Sequences: 438
Number of extensions: 1628
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)