Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_N13
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   4.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   4.2  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   9.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 352 KDYFPKGISVQTTFDLHDNTEWQVQDKHTIVPQ 450
           K  F  G+ +   FD +DN +  V   +  VPQ
Sbjct: 163 KSLFENGVEIGINFDKYDNIQVNVSGDN--VPQ 193


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/44 (18%), Positives = 23/44 (52%)
 Frame = +2

Query: 89  MKPFCM*SFAIKHFTRRTVNTQKLTIHVNMAKTKVTGATSRLKQ 220
           M  +C+   ++   +R    +Q + IH++ +  ++   + R+K+
Sbjct: 535 MPRYCLFGDSVNTASRMEATSQAMQIHISQSTKELLSPSYRVKE 578


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 675 NCCSISSTYSGNNSQNILFF 616
           N C+ S+ Y  NN+   L++
Sbjct: 309 NSCNYSNNYYNNNNYKKLYY 328


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +2

Query: 644 PEYVEEIEQQLKQRQEAMLLNQDSGAN 724
           P+  ++ +QQ +Q+Q   + N D   N
Sbjct: 841 PQQQQQQQQQQQQQQRGPMTNDDFNPN 867


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,623
Number of Sequences: 438
Number of extensions: 5428
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)