Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_N12
         (764 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   2.7  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   3.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.7  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    22   6.2  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -2

Query: 685 EGSYMKPFTPLPFPSDKTIMVAEPYKA*PAATSSLPG 575
           EGS+  P     F   +T     PY   P+ +S L G
Sbjct: 53  EGSFYLPMNMQGFVKQQTAPHGPPYAPHPSLSSGLGG 89


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 556 TGSPSDFFL*IAKIDPTDTRHSMLEEPSRGSKHTT 452
           T SPS+ F        T TRH+     +RG+  TT
Sbjct: 262 TSSPSNRFTRHLIQRRTHTRHTTTSHNTRGTPRTT 296


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 262  KPVSLNYMESPVTQTFKVKRSKNWTSFPTTSSSTCLN 372
            KP   +Y     T  ++ K + + T+ PTT+ S  ++
Sbjct: 1168 KPTKPSYRPPSTTNHWQTKTTTSTTTRPTTTVSQLID 1204


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 43  TFLGTFSDRYIIL 81
           TF GTF D +IIL
Sbjct: 532 TFGGTFGDTFIIL 544


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,169
Number of Sequences: 336
Number of extensions: 4299
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)