Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_N12
(764 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1458 + 37512954-37513112,37513217-37513324,37513357-375134... 234 7e-62
05_04_0448 - 21349877-21349990,21350263-21350338,21350418-213505... 198 5e-51
03_02_0486 - 8811539-8811610,8811725-8812231,8812327-8812551,881... 183 2e-46
06_03_1034 - 27044892-27044983,27045189-27045216,27045514-270459... 104 9e-23
04_02_0036 - 9033411-9033746,9033961-9034032,9034122-9034222,903... 58 8e-09
07_03_1690 - 28716998-28717091,28717203-28717897,28718264-287184... 30 1.8
03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394 29 3.1
07_03_0984 - 23131468-23131679,23132082-23132209,23132300-231323... 29 4.1
05_07_0076 - 27520152-27520379,27520785-27521096,27521194-275213... 29 4.1
03_05_0170 + 21482962-21483018,21483133-21483183,21483313-214835... 29 5.4
02_02_0707 + 13144147-13144788,13145115-13148663 29 5.4
>01_06_1458 +
37512954-37513112,37513217-37513324,37513357-37513431,
37513520-37513581,37513690-37513756,37514161-37514274,
37514357-37514443,37514571-37514641,37514718-37514783,
37514941-37515027,37515127-37515202,37515321-37515424,
37515550-37515583
Length = 369
Score = 234 bits (572), Expect = 7e-62
Identities = 125/239 (52%), Positives = 159/239 (66%), Gaps = 20/239 (8%)
Frame = +3
Query: 105 MTQQGPAFDVNAMTLTRWVLAQQRTAPTATGDLTQLLNSIQTAVKAIQSAVRKAGIAKLH 284
M + A+ + MT+TR+VL +Q P A GDLT LL+ I K + SAV KAG+AKL
Sbjct: 1 MDHEADAYRTDLMTITRYVLNEQSRNPEARGDLTILLSHIVLGCKFVASAVNKAGLAKLI 60
Query: 285 GISGDTNVQ--------------------GEEVKKLDVLSNDLFINMLKSSFTTCLLVSE 404
G++G+TNVQ GEE KKLDVLSN++F+ L SS TC+LVSE
Sbjct: 61 GLAGETNVQASVPGNNCHLSQFLVSEIEIGEEQKKLDVLSNEVFVKALVSSGRTCVLVSE 120
Query: 405 ENQTVLQVETERRGKYVVCFDPLDGSSNIECLVSVGSIFAIYKKKSEGDPVESDALKPGR 584
E++ V+ RGKY VCFDPLDGSSNI+C VS+G+IF IY K + + D L+PG+
Sbjct: 121 EDEEATFVDPALRGKYCVCFDPLDGSSNIDCGVSIGTIFGIYMIKDKENVTLEDVLQPGK 180
Query: 585 ELVAAGYALYGSATMMVLSLGKGKGVNGFMYDPSIGEFILTDPNMKIPXKGKIYSINEG 761
+VAAGY +YGS+ +VLS G GVNGF DPS+GEFILT P++KIP KGKIYS+NEG
Sbjct: 181 NMVAAGYCMYGSSCTLVLS--TGNGVNGFTLDPSLGEFILTHPDIKIPKKGKIYSVNEG 237
>05_04_0448 -
21349877-21349990,21350263-21350338,21350418-21350504,
21350706-21350771,21350855-21350925,21351030-21351116,
21351201-21351314,21351612-21351678,21351807-21351868,
21351960-21352085,21352091-21352381
Length = 386
Score = 198 bits (482), Expect = 5e-51
Identities = 96/166 (57%), Positives = 123/166 (74%)
Frame = +3
Query: 264 AGIAKLHGISGDTNVQGEEVKKLDVLSNDLFINMLKSSFTTCLLVSEENQTVLQVETERR 443
A I++ H + + VQGEE KKLDVLSN++F+ L SS TC+LVSEEN+ + V+ R
Sbjct: 101 ASISRCH--TYEVAVQGEEQKKLDVLSNEVFVKALVSSGRTCVLVSEENEEAIIVDAPLR 158
Query: 444 GKYVVCFDPLDGSSNIECLVSVGSIFAIYKKKSEGDPVESDALKPGRELVAAGYALYGSA 623
GKY VCFDPLDGSSNI+C VS+G+IF IY K + + D L+PG +++AAGY +YGS+
Sbjct: 159 GKYCVCFDPLDGSSNIDCGVSIGTIFGIYMIKDKDNVTLDDVLQPGTDMLAAGYCMYGSS 218
Query: 624 TMMVLSLGKGKGVNGFMYDPSIGEFILTDPNMKIPXKGKIYSINEG 761
+VLS G GVNGF DPS+GEFILT PN+KIP +GKIYS+NEG
Sbjct: 219 CTLVLS--TGNGVNGFTLDPSLGEFILTHPNIKIPNRGKIYSVNEG 262
Score = 62.5 bits (145), Expect = 4e-10
Identities = 36/86 (41%), Positives = 48/86 (55%)
Frame = +3
Query: 105 MTQQGPAFDVNAMTLTRWVLAQQRTAPTATGDLTQLLNSIQTAVKAIQSAVRKAGIAKLH 284
M A + MT+TR VL +Q P + GD T LL+ I K + SAV KAG+AKL
Sbjct: 1 MDHAAEAQRTDLMTITRHVLNEQGRHPESRGDFTILLSHIVLGCKFVASAVNKAGLAKLI 60
Query: 285 GISGDTNVQGEEVKKLDVLSNDLFIN 362
G++GDTNVQ + S LF++
Sbjct: 61 GLAGDTNVQASNPISDPLYSTLLFLH 86
>03_02_0486 -
8811539-8811610,8811725-8812231,8812327-8812551,
8812648-8813064
Length = 406
Score = 183 bits (445), Expect = 2e-46
Identities = 104/220 (47%), Positives = 135/220 (61%), Gaps = 14/220 (6%)
Frame = +3
Query: 144 TLTRWVLAQQRTAPTATGDLTQLLNSIQTAVKAIQSAVRKAGIAKLHGISGDTNVQGEEV 323
TLT W+L Q++ A T G++T +L SI TA K I S V++A I+ L G+ G NVQGE+
Sbjct: 72 TLTTWLLKQEQ-AGTIDGEMTIVLASISTACKQIASLVQRAPISNLTGVQGAVNVQGEDQ 130
Query: 324 KKLDVLSNDLFINMLKSSFTTCLLVSEENQTVLQVETERRGKYVVCFDPLDGSSNIECLV 503
KKLDV+SN++F N LKSS T ++ SEE + VE G Y+V FDPLDGSSNI+ V
Sbjct: 131 KKLDVVSNEVFSNCLKSSGRTGVIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAV 190
Query: 504 SVGSIFAIYKKKSEG----------DPVESDAL----KPGRELVAAGYALYGSATMMVLS 641
S GSIF IY E D VE + +PG L+AAGY +Y S+ + VL+
Sbjct: 191 STGSIFGIYSPNDECLADIADDQNLDQVEQRCIVSVCQPGSNLLAAGYCMYSSSVIFVLT 250
Query: 642 LGKGKGVNGFMYDPSIGEFILTDPNMKIPXKGKIYSINEG 761
+ G GV F DP GEF+LT ++IP GKIY+ NEG
Sbjct: 251 I--GTGVYVFTLDPMYGEFVLTQEKVQIPKAGKIYAFNEG 288
>06_03_1034 -
27044892-27044983,27045189-27045216,27045514-27045908,
27046224-27046312,27046352-27046620,27047037-27047270
Length = 368
Score = 104 bits (249), Expect = 9e-23
Identities = 71/194 (36%), Positives = 103/194 (53%), Gaps = 4/194 (2%)
Frame = +3
Query: 189 ATGDLTQLLNSIQTAVKAIQSAVRKAGIAKL-HGISGD--TNVQGEEVKK-LDVLSNDLF 356
A DL L+ +Q+A K I + V G A+L G +G G + K LD LSN++
Sbjct: 23 AADDLVVLVAHVQSACKRIAALVASPGNAELSRGKAGGGVAVAAGRDAPKPLDELSNEII 82
Query: 357 INMLKSSFTTCLLVSEENQTVLQVETERRGKYVVCFDPLDGSSNIECLVSVGSIFAIYKK 536
++ L+ S ++ SEEN + V + YVV DPLDGS NIE + G+IF IY +
Sbjct: 83 LSSLRRSGKVAVMASEENHLPIWVSND--SPYVVVTDPLDGSRNIEVSIPTGTIFGIYNR 140
Query: 537 KSEGDPVESDALKPGRELVAAGYALYGSATMMVLSLGKGKGVNGFMYDPSIGEFILTDPN 716
+E D + + L S T +V S G G G +GF D GEF+LT P+
Sbjct: 141 LAELDHLPEEERAQLNSLQ--------SGTHLVAS-GFGAGTHGFTLDHLTGEFVLTHPS 191
Query: 717 MKIPXKGKIYSINE 758
++IP +G+IYS+N+
Sbjct: 192 IQIPPRGQIYSVND 205
>04_02_0036 -
9033411-9033746,9033961-9034032,9034122-9034222,
9034309-9034530,9034832-9034913,9035029-9035214,
9035311-9035445,9035543-9035641
Length = 410
Score = 58.0 bits (134), Expect = 8e-09
Identities = 48/166 (28%), Positives = 77/166 (46%)
Frame = +3
Query: 177 TAPTATGDLTQLLNSIQTAVKAIQSAVRKAGIAKLHGISGDTNVQGEEVKKLDVLSNDLF 356
T T +L +LL + A++ I VR A G + N G+E +D+L++ L
Sbjct: 83 TKATPDKNLIRLLICMGEAMRTISFKVRTASC----GGTACVNSFGDEQLAVDMLADKLL 138
Query: 357 INMLKSSFTTCLLVSEENQTVLQVETERRGKYVVCFDPLDGSSNIECLVSVGSIFAIYKK 536
L+ S SEE + + G + V FDPLDGSS ++ +VG+IF ++
Sbjct: 139 FEALEYSHVCKYACSEEVPELQDMGGPVDGGFSVAFDPLDGSSIVDTNFTVGTIFGVW-- 196
Query: 537 KSEGDPVESDALKPGRELVAAGYALYGSATMMVLSLGKGKGVNGFM 674
GD + G + VAA +YG T +++L G + F+
Sbjct: 197 --PGDKLTG---VTGGDQVAAAMGIYGPRTTYIIALKDCPGTHEFL 237
>07_03_1690 -
28716998-28717091,28717203-28717897,28718264-28718446,
28718552-28719585,28719805-28719978,28720051-28720168,
28720339-28720521,28720647-28720739,28720981-28721166,
28722247-28722507
Length = 1006
Score = 30.3 bits (65), Expect = 1.8
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Frame = +3
Query: 441 RGKYVVCFDPLDGSSNIECLVSVGSIFAIYKKKSEGDPVESDALKPGRELVAAGYALYGS 620
R KY+ DP+ S+N+ VS GS + I S G S L +L+ ++G
Sbjct: 316 RPKYLNIIDPIKSSNNLGRSVSKGSFYRIRGAFSFGAQNLSQILMLPTDLIPT--EIFGF 373
Query: 621 ATMMVLSLGKGK----GVNGFMYDPSI 689
+ S G+GK G NG ++PS+
Sbjct: 374 FVNTLKSHGRGKRSDVGNNG-SFEPSL 399
>03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394
Length = 1456
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 39 ADISRNVLGSLYHFISRILSRTMTQQGPAFDVNAMTLTRWVLAQQRTAPTA 191
+D+ R +L LYH I R +T +QG + M+ +RW+ +++ T+
Sbjct: 735 SDLPREMLSELYHSICRNEIKTTPEQGMGY--FEMSPSRWIDLMRKSKSTS 783
>07_03_0984 -
23131468-23131679,23132082-23132209,23132300-23132365,
23134421-23134515,23135292-23135340,23135428-23135487,
23135580-23135701,23135799-23135840,23135944-23135992,
23136095-23136166,23136638-23136738,23136835-23136910,
23137002-23137081,23137196-23137307,23137391-23137454,
23137540-23137603,23138544-23138570
Length = 472
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +3
Query: 366 LKSSFTTCLLVSEENQTVLQVETERRGKYVVCFDPLDGSSNIECLVSVGSIFAIYKKKSE 545
LKS T L + +Q +L V ++R GKY + + ++E L + S+ A+Y+ +
Sbjct: 51 LKSIVTLALTLLTSSQAILIVWSKRAGKYE--YSVTTANFSVEALKCLLSLIALYRTWNS 108
Query: 546 GDPVESDAL 572
E + L
Sbjct: 109 QGVTEDNRL 117
>05_07_0076 -
27520152-27520379,27520785-27521096,27521194-27521333,
27521893-27521956,27522071-27522277,27522350-27522493,
27522578-27522709,27522880-27524294,27524647-27524920,
27526096-27526129,27527028-27527059
Length = 993
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 707 GKNELSYRRVVHEAVHALALSQRQDHHGSRTIQGIARSD 591
G + L+ H H + LS+R + SRTIQG+ + D
Sbjct: 81 GNSPLALALYTHWFYHNIDLSERLNTRKSRTIQGLGKMD 119
>03_05_0170 +
21482962-21483018,21483133-21483183,21483313-21483500,
21483587-21483671,21483848-21483902,21483998-21484041,
21485045-21485113,21485207-21485307,21485396-21485452,
21485540-21485636
Length = 267
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = +3
Query: 309 QGEEVKKLDVLSNDLFINMLKSSFTTCLLVSEENQTVLQVETERRGKYVVCFDPLDGSSN 488
Q + V + D DL N L+ + + EE L + DPLDG++N
Sbjct: 36 QVDLVTETDKACEDLIFNHLRKHYPDHKFIGEETSAALGATADLTDDPTWIVDPLDGTTN 95
>02_02_0707 + 13144147-13144788,13145115-13148663
Length = 1396
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 42 DISRNVLGSLYHFISRILSRTMTQQGPAFDVNAMTLTRWV 161
D+ R L LY+ I R RT+ +QG + M+ +RWV
Sbjct: 676 DLPREFLSELYYSICRNEIRTIPEQGAG--CSEMSFSRWV 713
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,479,060
Number of Sequences: 37544
Number of extensions: 480247
Number of successful extensions: 1309
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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