Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_N11
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 31 0.17
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual 28 1.2
SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.1
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 27 2.1
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 27 2.8
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 26 4.9
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe... 26 4.9
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c... 26 6.5
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 25 8.6
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 8.6
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 31.1 bits (67), Expect = 0.17
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +1
Query: 427 PS*EDFKTMPTETWTSNDTTAYNGTSITVNHSNDN 531
PS DF + T++ + NDTTA NG S+T + S +N
Sbjct: 529 PSSVDFMSQSTDSLSKNDTTASNG-SMTPSSSQNN 562
>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/82 (25%), Positives = 38/82 (46%)
Frame = +1
Query: 346 FKRIPNKNIKTTIQFKYDKSKPATFTVPS*EDFKTMPTETWTSNDTTAYNGTSITVNHSN 525
F IP K+ + FK DKS+ + ++F+ ++ + ND T N + V +SN
Sbjct: 31 FWLIP-KSEYLNVAFKSDKSRNQALFSHAIKEFQ----DSISPNDATTQNPFMLAVVNSN 85
Query: 526 DNVNASFSDLIEYKGVQAAFCV 591
++ I KG+ +C+
Sbjct: 86 EDARRWIRRSIFCKGIYEIYCI 107
>SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 107
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -1
Query: 465 CFGRHSFEVFLTRYCERGWFTLIIFKLN--CSFYVFIWYPFKAYHSLFVVKLYFNFI 301
CFG + + ER F + + N CS Y F ++++ L V+ YF+ +
Sbjct: 17 CFGNNYLIILPGIMLERNVFRHLNYSTNSICSHYQFFGGHYESFELLVVIVYYFSHV 73
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 493 NGTSITVNHSNDNVNASFSDLIEYKGVQAAFCVAYTII-FAVGIFGNALVCYAVIRNRA 666
+G + + +N+ N S S ++ ++ + I +VG+F +ALV Y + R+
Sbjct: 696 SGIEVATSLTNNTYNTSSSSTLDVNSLKFGLVMVQIAIGISVGLFASALVVYPFGKRRS 754
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 27.1 bits (57), Expect = 2.8
Identities = 19/74 (25%), Positives = 29/74 (39%)
Frame = +1
Query: 466 WTSNDTTAYNGTSITVNHSNDNVNASFSDLIEYKGVQAAFCVAYTIIFAVGIFGNALVCY 645
W A G S+ + H+N ++ F ++ CV I G F L C
Sbjct: 612 WKERTFHALLGNSLLLEHNNVSIPDDFDSKLKLSSSSGLTCVRIAI---DGQFVGFLGCM 668
Query: 646 AVIRNRAMQTVTNL 687
+R + QTV+ L
Sbjct: 669 DQVRPDSYQTVSAL 682
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +1
Query: 613 VGI-FGNALVCYAVIRNRAMQTVTN 684
VGI FGN+ AV RNRA+ + N
Sbjct: 8 VGIDFGNSKTVIAVARNRAIDVIVN 32
>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 163
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 381 CSFYVFIWYPFKAYHSLFVVKLYFNFIL 298
C Y FIWYPF +V ++ +F++
Sbjct: 71 CWLYFFIWYPFALL--ALMVGVFLSFVM 96
>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 594
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -1
Query: 417 RGWFTLI--IFKLNCSFYVFIWYPFKAYHSLF 328
R +F +I IFK C ++F++ PF + LF
Sbjct: 488 RSYFMVIEPIFKKICYLWLFLYCPFTPFQILF 519
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +1
Query: 376 TTIQFKYDKSKPATFTVPS*EDFKTMPTETWTSNDTTAYNGTSITVNHSNDNVNASFSDL 555
+T Q + S AT + + +F T P +ND A N +++ +HS++ A+ D+
Sbjct: 36 STYQLQSQLSHSATSNLSTAANFHTRPP---IANDENAQNLSTVNSSHSSELSKANLVDV 92
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 25.4 bits (53), Expect = 8.6
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +1
Query: 328 K*AMICFKRIPNKNIKTTIQFKYDKSKPATFTVPS*EDFKTMPTETWTSNDTTAYN-GTS 504
K A FK++ N+ TT++ Y + P+T PS + + PT T S ++ + T
Sbjct: 81 KFAASMFKQLNASNMITTVRSNYASNVPST---PS-DSTQQPPTNTLPSVSASSQSVETC 136
Query: 505 ITVNHSNDNVNASFSDLIEYKGVQ 576
TV+ D S SD+ E + ++
Sbjct: 137 ETVDEDIDTQTMS-SDMSEVQSME 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,354
Number of Sequences: 5004
Number of extensions: 53007
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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