Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_N11
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0450 - 3344203-3344259,3344339-3344506,3344743-3344956,334...    29   3.9  

>01_01_0450 -
           3344203-3344259,3344339-3344506,3344743-3344956,
           3345039-3345101,3345582-3345769,3345846-3346029,
           3346535-3346606,3346676-3346787,3346878-3346953,
           3347050-3347100,3347179-3347260,3347331-3347567,
           3347650-3347772,3348141-3348326,3348680-3349625,
           3350426-3350551,3350683-3350811,3350918-3351049,
           3351167-3351301,3351450-3351575,3352080-3352148,
           3352149-3352205,3352302-3352436,3352600-3352704,
           3352841-3352906,3353333-3353503,3353806-3353983
          Length = 1395

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 400 KSKPATFTVPS*EDFKTMPTETWTSNDTTAYNGTSITVNHSND 528
           K++PA F++P+  D K   +  +   D T  NG S+ ++ + D
Sbjct: 669 KTEPAQFSIPAKPDRKHTDSLEYAVPDATLANGNSVRLHAARD 711


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,980,784
Number of Sequences: 37544
Number of extensions: 278950
Number of successful extensions: 554
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)