Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_N06
(523 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 95 7e-21
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 93 2e-20
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 90 2e-19
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.32
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 28 0.97
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 27 2.2
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 3.0
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 3.0
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 26 3.9
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.2
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 25 6.8
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 9.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 9.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.0
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 94.7 bits (225), Expect = 7e-21
Identities = 39/69 (56%), Positives = 60/69 (86%)
Frame = +1
Query: 88 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRX 267
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIEA++E+++ +I ELNGKD+++LIAAG
Sbjct: 1 MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60
Query: 268 KLSSMPVGG 294
KL+++P GG
Sbjct: 61 KLATVPTGG 69
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 93.5 bits (222), Expect = 2e-20
Identities = 40/69 (57%), Positives = 60/69 (86%)
Frame = +1
Query: 88 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRX 267
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIEA+AE+++ +I+ELNGK++E+LIAAG
Sbjct: 1 MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60
Query: 268 KLSSMPVGG 294
KLS++P G
Sbjct: 61 KLSTVPSAG 69
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 90.2 bits (214), Expect = 2e-19
Identities = 37/69 (53%), Positives = 60/69 (86%)
Frame = +1
Query: 88 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRX 267
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIE+++E+++ +I EL+GKD+++LIAAG
Sbjct: 1 MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60
Query: 268 KLSSMPVGG 294
KL+++P GG
Sbjct: 61 KLATVPSGG 69
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 29.5 bits (63), Expect = 0.32
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Frame = -3
Query: 224 SSVITFLSFSASASIP--TELRIFSTSAAAGVVLPPSTASKYAAT 96
SSV T LS SAS+SIP + STS ++ V+P S++S +++
Sbjct: 8 SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSS 52
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 27.9 bits (59), Expect = 0.97
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 239 TSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKY 105
+ L + S T +S S+ S+PT+ + T + + V PPS S Y
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQSLY 570
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -3
Query: 254 AISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 111
++S S+ L S++ T S +AS+PT I S S P+T+S
Sbjct: 79 SLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSS 126
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 154 VEKILSSVGIEADAEKLKKVITELNG 231
V++I VG+E D+E K + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 3.0
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -3
Query: 239 TSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYAAT 96
T LP ++V T SFS SAS T +++ +V PPST+ T
Sbjct: 37 TPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPSTSHNSTTT 82
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 3.9
Identities = 6/15 (40%), Positives = 12/15 (80%)
Frame = +2
Query: 83 KKCVTWPRIYWLCWV 127
+K +W RI+W+C++
Sbjct: 299 EKAESWKRIFWMCYI 313
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 422 TKLYKSTRRWSLFQFMF 472
TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.0 bits (52), Expect = 6.8
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = -3
Query: 266 SRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 111
S P+A+S +TS+P S+ + +S S S S T L S+S + V+ +T S
Sbjct: 139 SSPSAVSSTTSIP--SISSTISSSVSTSSFTSL---SSSGFSTVLSSTNTTS 185
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -3
Query: 272 SXSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTA 114
S P+A + S P+SS+ +F + SA+++ P+ + S A P +T+
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATS 503
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 24.6 bits (51), Expect = 9.0
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = -3
Query: 293 PPTGIDDSXSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTA 114
P + + + S A + ST PLSSV + + SAS++ T + ST+A + P ++
Sbjct: 323 PLSSVSSANSTTATSTSST--PLSSVNSTTATSASSTPLTSVN--STTATSASSTPLTSV 378
Query: 113 SKYAAT 96
+ +AT
Sbjct: 379 NSTSAT 384
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -3
Query: 260 PAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYAAT 96
P + STS+P+ T + + S+ +PT STS +PP+ S T
Sbjct: 252 PPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTSIPPTGNSTTPVT 302
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,523,294
Number of Sequences: 5004
Number of extensions: 22246
Number of successful extensions: 94
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -