Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_N06
(523 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 91 7e-19
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 78 5e-15
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 77 1e-14
07_01_1001 - 8460467-8460799 63 2e-10
07_03_0321 + 16757414-16757743 61 6e-10
01_06_0098 - 26416768-26416998 32 0.32
08_02_1093 - 24271826-24273427 29 1.7
06_03_0854 + 25400855-25403741,25406174-25407708 29 2.3
12_01_0090 + 717524-719080 28 4.0
11_06_0264 - 21785450-21786928 28 5.2
07_03_1321 - 25794146-25794904 27 6.9
04_04_1284 + 32376870-32376874,32376876-32376935,32377166-323773... 27 6.9
12_02_1217 + 27082452-27083593,27085041-27085158 27 9.1
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 27 9.1
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 90.6 bits (215), Expect = 7e-19
Identities = 40/70 (57%), Positives = 58/70 (82%)
Frame = +1
Query: 88 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRX 267
M+ +AAYLLAVLGG T+P+A D++ IL SVG+EA+ E+L+ +++EL GKD+ ++IAAGR
Sbjct: 1 MKLIAAYLLAVLGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGRE 60
Query: 268 KLSSMPVGGG 297
K +S+P GGG
Sbjct: 61 KFASVPSGGG 70
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 77.8 bits (183), Expect = 5e-15
Identities = 33/71 (46%), Positives = 52/71 (73%)
Frame = +1
Query: 85 KMRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGR 264
+M++++AYLLA L G P+A D+ IL SVG E D K++ ++++L GKD+ ++IA+GR
Sbjct: 193 RMKFISAYLLATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGR 252
Query: 265 XKLSSMPVGGG 297
K +S+P GGG
Sbjct: 253 EKFASVPCGGG 263
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 76.6 bits (180), Expect = 1e-14
Identities = 32/70 (45%), Positives = 52/70 (74%)
Frame = +1
Query: 88 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRX 267
M++++AYL+A L G ++P A D+ IL SVG E D K++ ++++++GKD+ +LIA GR
Sbjct: 1 MKFISAYLMAYLAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGRE 60
Query: 268 KLSSMPVGGG 297
K +S+P GGG
Sbjct: 61 KFASVPSGGG 70
>07_01_1001 - 8460467-8460799
Length = 110
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/68 (42%), Positives = 44/68 (64%)
Frame = +1
Query: 88 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRX 267
MR+VAAYL+A +GG +P DV IL +VG + D +KL + ++ GKD+ +++AAG
Sbjct: 1 MRFVAAYLMATIGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSE 60
Query: 268 KLSSMPVG 291
L+ VG
Sbjct: 61 MLAFGGVG 68
>07_03_0321 + 16757414-16757743
Length = 109
Score = 60.9 bits (141), Expect = 6e-10
Identities = 27/63 (42%), Positives = 42/63 (66%)
Frame = +1
Query: 88 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRX 267
MR+VAAYL+A +GG +P DV IL +VG + D +KL + ++ GKD+ +++AAG
Sbjct: 1 MRFVAAYLMATIGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSE 60
Query: 268 KLS 276
L+
Sbjct: 61 MLA 63
>01_06_0098 - 26416768-26416998
Length = 76
Score = 31.9 bits (69), Expect = 0.32
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 139 PAAADVEKILSSVGIEADAEKLKKVITELNGKD 237
P V KI+ +V IEAD+ + K ++ L GKD
Sbjct: 16 PPPPAVVKIIETVHIEADSAEFKSIVQRLTGKD 48
>08_02_1093 - 24271826-24273427
Length = 533
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +1
Query: 85 KMRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGR 264
+ R AA +AV G+TT AAA + SS G + ++ + L +D +A R
Sbjct: 3 RKREAAAAAVAVADGETTTAAARADSSSSSEGGSVCDDVVRNIFARLPARDAVASMALSR 62
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -3
Query: 296 PPPTGIDDSXSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPP 123
PPP I + A +S P+S+V + L+ SASA+ F+ + A +PP
Sbjct: 1120 PPPAPIPAATPAKALVSAPAPAPISTVSSTLAASASAA-----AAFAPAPVAAEAIPP 1172
>12_01_0090 + 717524-719080
Length = 518
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -3
Query: 293 PPTGIDDSXSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIF 159
PP + S P ++ S+S SS + + ++S S+PT L F
Sbjct: 60 PPAVLSPSLVCPVIVAFSSSQAPSSALLLFNHASSCSLPTPLPTF 104
>11_06_0264 - 21785450-21786928
Length = 492
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -3
Query: 296 PPPTGIDDSXSRPAAISCSTSLPLSSVITFLSFSASASIPTE 171
PPP + + S AIS + V FL S++A IPTE
Sbjct: 384 PPPPPLATAASTATAISVAGLGGCGDVALFLGKSSAACIPTE 425
>07_03_1321 - 25794146-25794904
Length = 252
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -3
Query: 272 SXSRPA--AISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 111
S + PA A+ ++S P ++ T L A A + + R +T+AAA PPS+ S
Sbjct: 149 SAAAPAFQAMMRASSSPATNTTTSLVLDALAML-AKSRAIATAAAAAAAAPPSSGS 203
>04_04_1284 +
32376870-32376874,32376876-32376935,32377166-32377301,
32377439-32377596,32377791-32377881,32377975-32378094,
32378166-32378234,32378354-32378445,32378578-32378680,
32378761-32378868,32378949-32379011,32379073-32379144,
32379322-32379399,32379478-32379540,32379617-32379680,
32379817-32379902,32380456-32380569,32380760-32380837,
32381068-32381303,32381486-32381576,32381706-32381894,
32382082-32382117
Length = 703
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 169 SSVGIEADAEKLKKVITELNGKDVEQLIAAGRXKLSSMPV 288
+ VG D+EKL+ ELN + +E L+A K+ +PV
Sbjct: 426 TGVGNIDDSEKLRP--EELNQQTIEALVAENNLKMEILPV 463
>12_02_1217 + 27082452-27083593,27085041-27085158
Length = 419
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 106 YLLAVLGGKTTPAAADVEKILSSVGIEADAEKL 204
Y+LA+ TPA +D E+ VG +AD + L
Sbjct: 27 YVLALSSSCNTPACSDEEEEDDEVGSDADGDDL 59
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 42 LFFRHYTFRVN*DLKNALRGRVFTGCAGWQDHASCR*R*EDPQL 173
+ HY ++V K+ GRV T A WQD + R P L
Sbjct: 501 MLINHYKYQVWEVFKDKFSGRVATYVADWQDEENVGSRDRAPGL 544
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,463,099
Number of Sequences: 37544
Number of extensions: 160841
Number of successful extensions: 490
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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