Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_N02
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51235| Best HMM Match : Peptidase_C48 (HMM E-Value=0.00046)         30   2.0  
SB_20166| Best HMM Match : Kinesin (HMM E-Value=0)                     29   3.4  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_29694| Best HMM Match : Pkinase (HMM E-Value=3.8)                   28   6.0  

>SB_51235| Best HMM Match : Peptidase_C48 (HMM E-Value=0.00046)
          Length = 534

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +1

Query: 304 THNIVFFGREEETQHLAPCQHSRVVQLD-CGEQTLNLVQPLYSSN 435
           TH++ F  + ++T  +   ++S+ +Q D C EQTL ++ P  S+N
Sbjct: 254 THSLHFVAKRDDTTMIT-AKNSQFMQTDQCQEQTLIVIPPTCSAN 297


>SB_20166| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 378

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = +1

Query: 31  NLKVYLKLGRPLIYSTIVMFIVIPGTLLT 117
           N ++YLK+GRPL+Y+ +  +    GTLLT
Sbjct: 64  NHELYLKVGRPLVYAALNGY---KGTLLT 89


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 155  PTSISNW--LSILTMVNSVPGMTINITIVLYINGLPNFKYTFRLSI 24
            PTS +N     +  M+ S  G    +TI    N LPNFKY FR+S+
Sbjct: 1876 PTSAANTDLARLQDMLQSETGA--RVTIRNSTNLLPNFKYEFRVSV 1919


>SB_29694| Best HMM Match : Pkinase (HMM E-Value=3.8)
          Length = 192

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 289 DVSYQTHNIVFFGREEETQHLAPCQH 366
           DV Y  H +  FG E+   +L P QH
Sbjct: 76  DVLYTPHTVTSFGNEDHDYNLYPFQH 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,320,662
Number of Sequences: 59808
Number of extensions: 384655
Number of successful extensions: 1039
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)