Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_N02
         (673 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z97187-1|CAB51772.1| 1425|Drosophila melanogaster swiss cheese p...    29   4.4  
AE014298-1099|AAF46305.3| 1425|Drosophila melanogaster CG2212-PA...    29   4.4  

>Z97187-1|CAB51772.1| 1425|Drosophila melanogaster swiss cheese
           protein protein.
          Length = 1425

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 289 DVSYQTHNIVFFGREEETQHLAPCQHSRVVQLDCGEQTLNLVQP 420
           D  Y   +I  FG  E+   L  C+H+++++L  G+    +  P
Sbjct: 164 DALYMLQSIRIFGHFEKPVFLRLCKHTQLLELMAGDYLFKITDP 207


>AE014298-1099|AAF46305.3| 1425|Drosophila melanogaster CG2212-PA,
           isoform A protein.
          Length = 1425

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 289 DVSYQTHNIVFFGREEETQHLAPCQHSRVVQLDCGEQTLNLVQP 420
           D  Y   +I  FG  E+   L  C+H+++++L  G+    +  P
Sbjct: 164 DALYMLQSIRIFGHFEKPVFLRLCKHTQLLELMAGDYLFKITDP 207


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,803,324
Number of Sequences: 53049
Number of extensions: 564288
Number of successful extensions: 1104
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2910007350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)