Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_M23
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    99   2e-22
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   3.5  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   3.5  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    25   6.1  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score =   99 bits (238), Expect = 2e-22
 Identities = 44/82 (53%), Positives = 55/82 (67%)
 Frame = +3

Query: 123 ITVQKVQGKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVA 302
           +T  K      L + +RRYDRKQ G+GGQ+KP+F         +VLRLEC  CK ++Q+ 
Sbjct: 25  VTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHKKAKVTKKVVLRLECVSCKYKNQLV 84

Query: 303 LKRCKHFELGGDKKRKGQMIQF 368
           LKRCKHFELGG+KK KG  IQF
Sbjct: 85  LKRCKHFELGGEKKTKGAAIQF 106


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 144 GKGTLPRXRRRYDRKQQGYGGQS 212
           G GT+P    ++ + QQGY  QS
Sbjct: 760 GYGTMPYNNNKFGQPQQGYMSQS 782


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 152 AFXLDFLYCDTLCTLWHL 99
           A  L +LY DTL + WHL
Sbjct: 683 AILLHYLYTDTLLSPWHL 700


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 3   AGRCSLTFVDIVPNELKNGERTKTAQDVL 89
           +GRC L F+ ++P E  +  +T  + + L
Sbjct: 133 SGRCVLQFLSVLPEEASDPRKTSLSWEEL 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,520,406
Number of Sequences: 5004
Number of extensions: 25068
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)