Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_M22
(670 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 109 2e-24
SB_24074| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.030
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 33 0.21
SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43) 33 0.28
SB_21640| Best HMM Match : fn3 (HMM E-Value=2.3e-36) 31 0.64
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 31 1.1
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 30 1.5
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 30 1.5
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_41370| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_13991| Best HMM Match : MutS_V (HMM E-Value=0) 29 4.5
SB_31762| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_6575| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_20992| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36) 28 6.0
SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_41973| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 109 bits (262), Expect = 2e-24
Identities = 81/211 (38%), Positives = 116/211 (54%), Gaps = 17/211 (8%)
Frame = +2
Query: 8 LVVAGGGSRVPXXXXXXXXXXQH-EPARSINADEAATLGAVYRAA-SLATGYKVA--PLN 175
+V+ GGG RVP + E A++INADEAA LG R + + + P +
Sbjct: 318 VVLVGGGIRVPKVQDALLRAVKKPELAKNINADEAAALGMPARLPMNYVQRFCLCRVPSS 377
Query: 176 VRDAVLLPIQVVFTRH------ADG-----VDKLVKRTLFGPMNPYPQKKVITFNKHTED 322
L +V R +G K +RTL+ MN PQKKV+TFNKHT+D
Sbjct: 378 TSRQGLQGQEVHHQRREHIPNTGEGRGRHRKHKARERTLYYNMNTVPQKKVMTFNKHTDD 437
Query: 323 FSFNVNYAELDHIPS-TELQYIGALNLSEVSLSGVSAALGKHVGENVEHKGIKAHFNMDD 499
F F+V+Y L+ + + +L G LN+S VS+ GV+ AL KH + E KGIKA+F +D+
Sbjct: 438 FQFHVSYNGLEDLMNPADLAMFGELNVSTVSVKGVADALNKHALKG-ESKGIKAYFRLDE 496
Query: 500 SGILNLVNVEFVAEKTVTEDEDK-DSTLSKI 589
+G+ N+ VE V EK + ED+ +STLS +
Sbjct: 497 NGLFNIDKVESVFEKMPEDIEDENESTLSSM 527
>SB_24074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 87
Score = 35.9 bits (79), Expect = 0.030
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +2
Query: 14 VAGGGSRVPXXXXXXXXXXQHEPARSINADEAATLGAVYRAASLATGYKVAPLNVRDAVL 193
+ GG +R+P E ++NADEA G + A L+ ++V +V D
Sbjct: 12 IVGGSTRIPAIKDIIKNVFGKELMTTMNADEAVARGCALQCAMLSPTFRVREFSVNDITP 71
Query: 194 LPI 202
PI
Sbjct: 72 YPI 74
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 8 LVVAGGGSRVPXXXXXXXXXXQ-HEPARSINADEAATLGAVYRAASL 145
+V+ GG +R+P + EP+R IN DEA GA +A L
Sbjct: 1031 IVLVGGSTRIPKVQQLVKDFFEGKEPSRGINPDEAVAYGAAVQAGVL 1077
>SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)
Length = 607
Score = 32.7 bits (71), Expect = 0.28
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = +2
Query: 485 FNMDDSGILNLVNVEFVAEKTVTEDEDKDSTLSKIGSTISKLFGSDSXTPEKTEEQPQGR 664
+N DD G +N E + ++ ED+DS +I +T K++ + S + K+EE+P+
Sbjct: 344 YNGDDDGEVNREKEENDVDDEKSDKEDEDS--EQIYNTWLKIYNTSSTSYGKSEEKPRDS 401
Query: 665 S 667
S
Sbjct: 402 S 402
>SB_21640| Best HMM Match : fn3 (HMM E-Value=2.3e-36)
Length = 399
Score = 31.5 bits (68), Expect = 0.64
Identities = 22/76 (28%), Positives = 35/76 (46%)
Frame = +2
Query: 362 PSTELQYIGALNLSEVSLSGVSAALGKHVGENVEHKGIKAHFNMDDSGILNLVNVEFVAE 541
P T + I N S S++ +AL ++V + +G + M D+GI+ VNV
Sbjct: 2 PQTAPERISGYNTSTFSINVTWSALKENVSGVL--RGYTVFYRMRDAGIITTVNVSLPIP 59
Query: 542 KTVTEDEDKDSTLSKI 589
T E +D + S I
Sbjct: 60 NTHVEIKDLEVNTSYI 75
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 8 LVVAGGGSRVPXXXXXXXXXXQHEPARSINADEAATLGAVYRAASLATGYK 160
+++ GG +R+P P++++N DEA +GA + LA K
Sbjct: 90 VLLVGGMTRMPKVQQTVQDIFGRVPSKAVNPDEAVAIGAAIQGGVLAGDVK 140
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 8 LVVAGGGSRVPXXXXXXXXXXQHEPARSINADEAATLGAVYRAASLATGYK 160
+++ GG +R+P P++++N DEA +GA + LA K
Sbjct: 145 VLLVGGMTRMPKVQQTVQDIFGRVPSKAVNPDEAVAIGAAIQGGVLAGDVK 195
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 30.3 bits (65), Expect = 1.5
Identities = 59/222 (26%), Positives = 94/222 (42%), Gaps = 7/222 (3%)
Frame = +2
Query: 8 LVVAGGGSRVPXXXXXXXXXXQ-HEPARSINADEAATLGAVYRAASLATGYKVAPLNVRD 184
+V+ GG +R+P E +SIN DEA GA +AA L G K V+D
Sbjct: 336 IVLVGGSTRIPKIQKMLQELFGGKELNKSINPDEAVAYGAAVQAAIL-HGDK--DDTVKD 392
Query: 185 AVLL---PIQVVFTRHADGVDKLVKRTLFGPMNPYPQKKVITFNKHTEDFSFNVNYAELD 355
+LL P+ + + L+KR + P K+ TF ++++ L
Sbjct: 393 LLLLDVAPLSMGIETAGGVMSVLIKRN-----STIPTKQTQTFTTYSDN-----QPGVLI 442
Query: 356 HIPSTELQYIGALN-LSEVSLSGVSAALGKHVGENVEHKGIKAHFNMDDSGILNL--VNV 526
+ E N L + L+G+ A + V + I+ F++D +GILN+ V+
Sbjct: 443 QVFEGERSMTAHNNLLGKFELTGIPPA-PRGVPQ------IEVTFDIDANGILNVSAVDK 495
Query: 527 EFVAEKTVTEDEDKDSTLSKIGSTISKLFGSDSXTPEKTEEQ 652
E +T DK LSK I ++ S E+ E+Q
Sbjct: 496 STGKENKITITNDK-GRLSK--EDIERMVNEASKYKEEDEKQ 534
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 30.3 bits (65), Expect = 1.5
Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 4/197 (2%)
Frame = +2
Query: 8 LVVAGGGSRVPXXXXXXXXXXQHEPA-RSINADEAATLGAVYRAASLATGYKVAPLNVRD 184
+V+ GG +RVP + +SIN DEA GA +AA L+ +V
Sbjct: 335 VVLVGGSTRVPKIQKMLEEYFSGKSLNKSINPDEAVAYGAAVQAAILSGDKSDEVKDVLL 394
Query: 185 AVLLPIQVVFTRHADGVDKLVKRTLFGPMNPYPQKKVITFNKHTEDF-SFNVNYAELDHI 361
+ P+ + + + KL++R P K TF ++++ + + E +
Sbjct: 395 VDVAPLSLGIETAGEVMTKLIERNA-----RIPTKATQTFTTYSDNQPAVTIRVFEGER- 448
Query: 362 PSTELQYIGALNLSEVSLSGVSAALGKHVGENVEHKGIKAHFNMDDSGILNLVNVEFVAE 541
P T+ + L + LSG+ A + V + I+ F++D +GILN+ +
Sbjct: 449 PLTKHNNL----LGKFDLSGIPPA-PRGVPQ------IEVTFDIDANGILNVSAKDKSTG 497
Query: 542 KT--VTEDEDKDSTLSK 586
KT +T DK LSK
Sbjct: 498 KTGSITITNDK-GRLSK 513
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 29.9 bits (64), Expect = 2.0
Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 8/223 (3%)
Frame = +2
Query: 8 LVVAGGGSRVPXXXXXXXXXXQ-HEPARSINADEAATLGAVYRAASLATGYKVAPLNVRD 184
+V+ GG +R+P E +SIN DEA GA +AA L A ++
Sbjct: 428 IVMVGGSTRIPKIQSLLQNFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEATQDLLL 487
Query: 185 AVLLPIQVVFTRHADGVDKLVKRTLFGPMNPYPQKKVITFNKHTED-FSFNVNYAELDHI 361
+ P+ + + +KR P K+ TF ++++ S + E +
Sbjct: 488 LDVAPLTLGLETAGGVMTAAIKRN-----TTIPTKQTQTFTTYSDNQTSVLIQVYEGERS 542
Query: 362 PSTELQYIGALNLSEVSLSGVSAALGKHVGENVEHKGIKAHFNMDDSGILNLVNVEFVAE 541
+ + +G + LSG+ A + V + I F++D +GILN+ V+
Sbjct: 543 LTKDNNLLG-----KFELSGIPPA-PRGVPQ------IDVTFDVDSNGILNVSAVDKSTG 590
Query: 542 K----TVTEDEDKDS--TLSKIGSTISKLFGSDSXTPEKTEEQ 652
K T+T D+ + S + ++ K +D E+ + +
Sbjct: 591 KENKITITNDKGRLSKEDIERMVKEAEKFKAADEAVRERIQSK 633
>SB_41370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 465
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = -1
Query: 442 FTQSRGNSTQRNLTQVQSTNVLQFSGWDV--IKFCIVHVEGEILCVLIESDHLLLW-VGV 272
F + R NLTQ+ TN+ F ++ I + IV + ++ V + + L++ V
Sbjct: 6 FIEERSQEDILNLTQLNCTNIETFESFETRWIDYVIVFLSALVVVVGVPGNVLVITVVRT 65
Query: 271 HRPKESSLNQLVDAIGVSCEDNL 203
+R ++ N L+ + ++C D L
Sbjct: 66 NRVMRTTTNYLL--VNLACSDLL 86
>SB_13991| Best HMM Match : MutS_V (HMM E-Value=0)
Length = 530
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 320 DFSFNVNYAELDHIPSTELQYIGALNLSEVSLSGVSAALGKHVGEN 457
D SF ++ AEL H PS +++ G SA LG+ V ++
Sbjct: 419 DQSFGIHVAELAHFPSDVIEFAKQKAAELEDFQGSSAELGQGVTDS 464
>SB_31762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1038
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Frame = +2
Query: 404 EVSLSGVSAALGKHVGENVEHKGIKAHFNMD---------DSGILNLVNVEFVAEKTVTE 556
EV+++ AALG + N + + AHFN+ + I+NL + + EK +
Sbjct: 807 EVAIASFHAALGFYQKSNNDQRQGDAHFNIGILNCKLGNYEEAIVNLTDALRLFEKIHND 866
Query: 557 DEDKDSTLSKIGST 598
E D+ LS IG+T
Sbjct: 867 QEQGDAHLS-IGNT 879
>SB_6575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 140 SLATGYKVAPLNVRDAV 190
+LATG+K++PLN RD +
Sbjct: 60 NLATGFKISPLNFRDLI 76
>SB_20992| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36)
Length = 641
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +2
Query: 395 NLSEVSLSGVSAALGKHVGENVEHKGIKAHFNMDDSGILNLVNVEFVAEKTVTEDEDKDS 574
N+ + +S +SAA V KG + +DSG L+L+ E V E+T E + D
Sbjct: 281 NVVDSCMSIMSAATTLTVYGQCIDKGTYQQLSRNDSGFLSLL-AEEVEEETGNESDGDDG 339
Query: 575 TLSKI 589
+ S +
Sbjct: 340 STSSV 344
>SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 27.9 bits (59), Expect = 7.9
Identities = 25/131 (19%), Positives = 54/131 (41%)
Frame = -1
Query: 547 GLLSNKFNVNQV*YAGVVHIEMCLNTFMFDIFANMFTQSRGNSTQRNLTQVQSTNVLQFS 368
G+ K + ++ V+ ++ + + +QS S ++++Q S +V Q
Sbjct: 301 GICECKHKLGEIKEDYVIEASQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSV 360
Query: 367 GWDVIKFCIVHVEGEILCVLIESDHLLLWVGVHRPKESSLNQLVDAIGVSCEDNLYWKQH 188
V + V + + +S + V + S++Q V G + D YW +
Sbjct: 361 SQSVSQSVSQSVSQSVSQLASQSVSQSVSQSVSQSVSQSVSQSVSQPGQNARD--YWIRR 418
Query: 187 SISYIQRGHFV 155
+SY++R F+
Sbjct: 419 GLSYLERYFFL 429
>SB_41973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2504
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = +2
Query: 101 DEAATLGAVYRAASLATGYKVAPLNVRDAVLLPIQVVFTRHADGVDKLVKRTLFGPMNPY 280
D ++ LG + +A+L + L V ++ V+ HA+ + L K GP P
Sbjct: 246 DTSSKLGLLAESAALQGRPRSMRLLVEKHCATLLKPVYV-HAEPLPTLTKTNFIGPALPP 304
Query: 281 PQKKV 295
P KKV
Sbjct: 305 PMKKV 309
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,892,898
Number of Sequences: 59808
Number of extensions: 416045
Number of successful extensions: 1530
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1529
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -