Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_M20
(475 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0094 - 5583932-5584036,5584137-5584200,5584305-5584387,558... 101 2e-22
03_06_0052 - 31295839-31295883,31296312-31296380,31296458-312965... 100 7e-22
03_06_0061 + 31352703-31353037,31353145-31353274,31353708-313539... 88 4e-18
07_01_0105 - 798883-798942,799118-799186,799282-799345,799434-79... 72 3e-13
08_02_0881 - 22216657-22216780,22216918-22217056,22217120-222171... 32 0.27
10_08_0365 + 17224777-17224852,17224949-17224989,17225175-172252... 29 1.4
01_05_0406 + 21875376-21875451,21875570-21875610,21876245-218763... 29 1.4
04_04_0503 - 25701050-25701343,25701431-25701528,25701629-257016... 29 1.9
01_01_0752 - 5808798-5810183 28 3.3
01_01_0691 - 5328169-5328228,5328300-5328488,5328611-5328768,532... 28 3.3
04_01_0105 + 1098551-1100392 28 4.4
01_05_0438 + 22142646-22143659,22144319-22144858 28 4.4
08_01_0469 - 4127950-4127988,4127989-4128264,4128845-4130861,413... 27 5.8
02_01_0457 - 3283759-3285240 27 5.8
05_02_0102 - 6616497-6616601,6616652-6617884 27 7.7
02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643... 27 7.7
>03_02_0094 -
5583932-5584036,5584137-5584200,5584305-5584387,
5584523-5584588,5584711-5584801,5585259-5585392,
5586219-5586413,5586886-5587015,5587873-5587958
Length = 317
Score = 101 bits (243), Expect = 2e-22
Identities = 42/57 (73%), Positives = 50/57 (87%)
Frame = +3
Query: 255 SRARVYADVNSQRPREYWDYESYVVDWGNQEDYQLVRKLGRGKYSEVFEAINITNNE 425
S ARVYADVN RPREYWDYE+ V+WG Q+DY++VRK+GRGKYSEVFE IN+TN+E
Sbjct: 2 STARVYADVNVHRPREYWDYEALAVEWGEQDDYEVVRKVGRGKYSEVFEGINVTNDE 58
>03_06_0052 -
31295839-31295883,31296312-31296380,31296458-31296521,
31296598-31296680,31297243-31297308,31297426-31297516,
31298090-31298247,31298432-31298476,31299189-31299318,
31300685-31300935
Length = 333
Score = 100 bits (239), Expect = 7e-22
Identities = 41/57 (71%), Positives = 49/57 (85%)
Frame = +3
Query: 255 SRARVYADVNSQRPREYWDYESYVVDWGNQEDYQLVRKLGRGKYSEVFEAINITNNE 425
S+ARVYADVN RP+EYWDYE+ V WG Q+DY++VRK+GRGKYSEVFE IN+ NNE
Sbjct: 57 SKARVYADVNVLRPKEYWDYEALTVQWGEQDDYEVVRKVGRGKYSEVFEGINVNNNE 113
>03_06_0061 +
31352703-31353037,31353145-31353274,31353708-31353902,
31354696-31354725,31355238-31355395,31355756-31355846,
31355924-31355989,31356331-31356413,31356495-31356558,
31356641-31356709,31356798-31356833
Length = 418
Score = 87.8 bits (208), Expect = 4e-18
Identities = 37/57 (64%), Positives = 45/57 (78%)
Frame = +3
Query: 255 SRARVYADVNSQRPREYWDYESYVVDWGNQEDYQLVRKLGRGKYSEVFEAINITNNE 425
S ARVYAD NSQRP+EYWDYES ++WG Q+ Y+++RKLGRGKYSEVFE +E
Sbjct: 85 SVARVYADANSQRPKEYWDYESLDIEWGEQDGYEVLRKLGRGKYSEVFEGFRPGGDE 141
>07_01_0105 -
798883-798942,799118-799186,799282-799345,799434-799516,
799957-800022,800143-800233,800622-800779,801144-801338,
801499-801628,803016-803168,803877-803962
Length = 384
Score = 71.7 bits (168), Expect = 3e-13
Identities = 27/40 (67%), Positives = 34/40 (85%)
Frame = +3
Query: 306 WDYESYVVDWGNQEDYQLVRKLGRGKYSEVFEAINITNNE 425
WDYE+ + WG Q+DY++VRK+GRGKYSEVFE IN+ NNE
Sbjct: 70 WDYEALTIRWGEQDDYEVVRKVGRGKYSEVFEGINVNNNE 109
Score = 51.6 bits (118), Expect = 3e-07
Identities = 20/31 (64%), Positives = 24/31 (77%)
Frame = +3
Query: 255 SRARVYADVNSQRPREYWDYESYVVDWGNQE 347
S+ARVY DVN RP+EYWDYE+ V WG Q+
Sbjct: 2 SKARVYTDVNVLRPKEYWDYEALTVQWGVQQ 32
>08_02_0881 -
22216657-22216780,22216918-22217056,22217120-22217192,
22218260-22218357,22218516-22218542,22218625-22218715,
22218819-22218900,22219983-22220098
Length = 249
Score = 31.9 bits (69), Expect = 0.27
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 351 YQLVRKLGRGKYSEVFEAINITNNE 425
++ +RK+G G Y EVFEA++I E
Sbjct: 27 FRRIRKIGEGTYGEVFEAMDIITGE 51
>10_08_0365 +
17224777-17224852,17224949-17224989,17225175-17225244,
17225338-17225486,17225940-17226035,17226481-17226551,
17227077-17227138,17227311-17227374,17227463-17227547,
17227631-17227757,17228241-17228374,17228808-17229122
Length = 429
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 351 YQLVRKLGRGKYSEVFEAINITNNE 425
Y+L RK+G G + E++ +NI N E
Sbjct: 9 YKLGRKIGSGSFGELYLGVNIHNGE 33
>01_05_0406 +
21875376-21875451,21875570-21875610,21876245-21876314,
21876410-21876558,21876671-21876766,21876863-21876933,
21877119-21877267,21877400-21877463,21877547-21877631,
21878079-21878139,21879005-21879144,21879266-21879559
Length = 431
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 351 YQLVRKLGRGKYSEVFEAINITNNE 425
Y+L RKLG G + E++ N+ NE
Sbjct: 9 YRLGRKLGSGSFGEIYLGTNVQTNE 33
>04_04_0503 -
25701050-25701343,25701431-25701528,25701629-25701689,
25701772-25701842,25701922-25702048,25702160-25702244,
25702346-25702409,25702732-25702793,25703214-25703284,
25703700-25703795,25703960-25704108,25704196-25704265,
25704483-25704523,25704668-25704743
Length = 454
Score = 29.1 bits (62), Expect = 1.9
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +3
Query: 351 YQLVRKLGRGKYSEVFEAINITNNE 425
++L +K+G G + E++ A+NI N+E
Sbjct: 9 FKLGKKIGSGSFGELYLAVNIQNSE 33
>01_01_0752 - 5808798-5810183
Length = 461
Score = 28.3 bits (60), Expect = 3.3
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +3
Query: 351 YQLVRKLGRGKYSEVFEAINITNNE 425
Y+L R LG+G +++V+ A N+ +N+
Sbjct: 12 YELGRMLGQGTFAKVYHARNLASNQ 36
>01_01_0691 -
5328169-5328228,5328300-5328488,5328611-5328768,
5329677-5329767,5330359-5330438,5330472-5330533,
5330603-5330730,5331290-5331508,5331586-5331715,
5331804-5331870,5331968-5332062,5332150-5332221,
5332307-5332362,5332485-5332554,5332662-5332735,
5332820-5332954,5334135-5334314
Length = 621
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 327 VDWGNQEDYQLVRKLGRGKYSEVFEAINITN 419
V GN Y+L RKLG+G + +V+ I++
Sbjct: 61 VQIGNSPTYKLERKLGKGGFGQVYVGRRISS 91
>04_01_0105 + 1098551-1100392
Length = 613
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 402 LQILHCISRDPACEPTDSLLGC 337
LQ+ H + RD EPT +L C
Sbjct: 361 LQLFHAMERDHGVEPTPDILAC 382
>01_05_0438 + 22142646-22143659,22144319-22144858
Length = 517
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 324 VVDWGNQEDYQLVRKLGRGKYSEVFEAINITNNE 425
VV +G+ E Y +R +G G VF A ++ E
Sbjct: 67 VVPFGSMESYDRLRLIGEGACGAVFRARHVATGE 100
>08_01_0469 -
4127950-4127988,4127989-4128264,4128845-4130861,
4131134-4131987
Length = 1061
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 249 VPSRARVYADVNSQRPREYWD--YESYVVDWGNQEDYQLVRKL 371
VP + A + + +PREYW Y S ++ G +D R++
Sbjct: 376 VPLAIIIIASLLANKPREYWSEVYNSIGLEHGYNDDVDNTRRI 418
>02_01_0457 - 3283759-3285240
Length = 493
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/25 (36%), Positives = 20/25 (80%)
Frame = +3
Query: 351 YQLVRKLGRGKYSEVFEAINITNNE 425
Y++ R+LG+G +++V+ A N+T+ +
Sbjct: 12 YEIGRQLGQGNFAKVYYARNLTSGQ 36
>05_02_0102 - 6616497-6616601,6616652-6617884
Length = 445
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 351 YQLVRKLGRGKYSEVFEAINITNNE 425
Y+L R LG G +S+V++A ++ + E
Sbjct: 12 YELGRSLGHGTFSKVYQARSLVSGE 36
>02_05_1170 +
34663853-34663928,34664038-34664078,34664317-34664386,
34664499-34664647,34664784-34664879,34665406-34665476,
34665637-34665698,34665778-34665841,34665950-34666034,
34666129-34666255,34666381-34666454,34666539-34666599,
34666683-34666771,34666897-34667206,34667763-34667815,
34668299-34668370,34668648-34668914,34669015-34669047,
34669163-34669245,34669522-34669594,34669834-34670170,
34670302-34670633,34670816-34671135,34671261-34671612,
34671691-34671906
Length = 1170
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +3
Query: 351 YQLVRKLGRGKYSEVFEAINITNNE 425
++L +K+G G + E+F A+N+ E
Sbjct: 9 FKLGKKIGSGSFGELFLAVNVQTGE 33
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,304,415
Number of Sequences: 37544
Number of extensions: 182675
Number of successful extensions: 459
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -