Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_M17
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 2.5
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma... 27 2.5
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 27 3.4
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 27 3.4
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.4
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 5.9
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 26 5.9
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 25 7.8
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 25 7.8
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.8
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Frame = +2
Query: 215 YDDKNYKLTEDPNMKNPLITNH----SPYGYVLKIMNSIDSQN 331
+ + +LT+ PN L+T+H S Y Y LK+ DS+N
Sbjct: 33 FSKREAQLTDTPNK---LLTDHDQSASDYAYALKLQQLFDSEN 72
>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 27.1 bits (57), Expect = 2.5
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 422 HLHSIEDLGGKKHAVRL-LEYVPGELLKNCPLSEALLYQLGEFVANLDNKLQN 577
HL +E + V+L L+Y L K ++ LL Q E ++NL +KLQN
Sbjct: 272 HLSRLEKIRELLTFVQLELKYYVEPLKKELQETKTLLAQKEEEISNLKDKLQN 324
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = -1
Query: 622 EHPHVLSADQTGVVEVLQFVIEISDKFS--ELIQESFGQGTVLQKLSRHVLQQSYGVFLA 449
E H+ V+ V++ + K+ E + + V ++R V+Q+ F+A
Sbjct: 930 EQLHIQKMVSKSVMPVVERLRSQGKKYQLVEAVVDDLIGAKVAPVIARQVMQRVVKKFIA 989
Query: 448 TQVLDRVQVTEYIPYWL 398
QV++ ++ EY+ + L
Sbjct: 990 GQVVEATELLEYLSFSL 1006
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 239 TEDPNMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQNEIMN 367
T+ +++ L+T S YVLK + + +NV V Q E +N
Sbjct: 50 TQYAGLRDSLVTYKSENSYVLKALLNAKIENVKPVGVQTENIN 92
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 26.6 bits (56), Expect = 3.4
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Frame = -1
Query: 634 WDHREHPHVLSADQTGVVEVLQFVI----EISDKFSELIQESFGQGTVLQKLSRHVLQQS 467
+ HR + + AD + EVL + + ++ ++L Q S LQ L +LQ
Sbjct: 58 YSHRNYLPIPEADSRNL-EVLNSISLTTGSVVNQINKLYQRSCDNANYLQDLRSLILQTP 116
Query: 466 YGVFLATQVLDRVQVTEYIPYWLGTGHGASGQKIHNLILGLNNADVLRVNR 314
ATQV + + + I L ++I +I LN + L V R
Sbjct: 117 TAEANATQVTESLNQIQKI---LQEASSKDREQIVQVIKELNKGNSLEVRR 164
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 97 EATTGAGAGYPSDNRPRAGEATGRASLRDIRAGPDRAERLRR 222
+A+ A YP+ P A R +LRD A P+ LR+
Sbjct: 530 KASGEAPYSYPAPPVPSVNNAGARLTLRDSGAAPEATYSLRQ 571
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.8 bits (54), Expect = 5.9
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +3
Query: 564 TNCRTSTTPVW 596
TNC+T TTP+W
Sbjct: 636 TNCQTRTTPLW 646
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +2
Query: 140 DHEQVKLLAER--LYGISVLDLTELNGYDDKNYKLTEDPNMKNPLITNHSPYGYVLKIMN 313
D+EQV L + L G +++ + GY + + EDP+ + L L++
Sbjct: 614 DYEQVLHLIQNSNLVGQAIIAYLQKKGYPEIALQFVEDPSTRFELALECGNLETALELAR 673
Query: 314 SIDSQNV 334
+ID V
Sbjct: 674 TIDRPEV 680
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -1
Query: 589 GVVEVLQFVIEISDKFSELIQESFGQGTVLQKLSRHVLQQS--YGVFLATQVLDRVQVTE 416
G+ + F +D+++ + +S+ + Q L ++ +G FL++ ++DR+
Sbjct: 29 GITNMRDFQSRFADRYNP-VTDSYSYSSARQGLITGMVNVGSFFGCFLSSPLMDRIGKRT 87
Query: 415 YIPYW 401
I +W
Sbjct: 88 SIMFW 92
>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 168
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 416 FGHLHSIEDLGGKKHAVRLLEYVPGE 493
+G LH I++LGG + + L+E V +
Sbjct: 71 YGLLHDIKELGGTEEDLELIEDVESD 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,629
Number of Sequences: 5004
Number of extensions: 52690
Number of successful extensions: 189
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -