Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_M17
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0333 - 24481029-24481109,24481185-24481253,24481785-244818...    30   1.5  
08_02_0098 - 12324664-12324822,12325430-12325543,12325649-123259...    29   3.5  
03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779     29   3.5  
02_04_0036 + 19097693-19098106                                         29   4.6  
09_02_0198 - 5705488-5705652,5706138-5706263,5706606-5706754,570...    28   8.0  
03_06_0391 - 33577872-33578093,33578556-33579218                       28   8.0  
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508...    28   8.0  

>04_04_0333 -
           24481029-24481109,24481185-24481253,24481785-24481853,
           24481923-24481944,24482302-24482393,24482688-24482803,
           24482899-24483042,24483287-24483476
          Length = 260

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +2

Query: 113 PGQVIRPIIDHEQVKLLAERLYGISVLDLTELN--GYDDKNYKLTEDPNMKNPLITNHSP 286
           PG +   +++   VK+   RL  +SVLD   L+   YD  + K  E   + +PL  N +P
Sbjct: 111 PGMLDHIMVETTGVKVALNRLAVVSVLDAHTLSVMPYDPSSMKSIEHAIISSPLGINPTP 170

Query: 287 YG 292
            G
Sbjct: 171 DG 172


>08_02_0098 -
           12324664-12324822,12325430-12325543,12325649-12325921,
           12326124-12326354,12326444-12326594,12326680-12326759,
           12326839-12326913,12326992-12327093,12328000-12328121,
           12329726-12329791,12330158-12330201,12330850-12330898,
           12330967-12331087,12334631-12334735
          Length = 563

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
 Frame = +2

Query: 179 GISVLDLTELNGYDDKNYKLTEDPNMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQ-- 352
           G+  L+ T  NG  +K Y    +P +  P++T  S     + I++S  S     +E Q  
Sbjct: 92  GLCQLEFT--NGQVEKRYLSRTEPKLPVPIVTCESALWRGVSILDSDSSGITMELELQWD 149

Query: 353 ---NEIMNFLATRSVTCPKPVRNI 415
              N +++   T  ++ P  V+NI
Sbjct: 150 GNPNIVLDIQTTLGISLPVQVKNI 173


>03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779
          Length = 704

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = +2

Query: 386 VTCPKPVRNIFGHLHSIEDLGGKKHAVRLLEYVPGELLKNCPLSEALLYQLGEFV-ANLD 562
           + C KP RNI+G L ++ DL G++ AV L       +L+ C L     + +G  V    D
Sbjct: 280 IKCEKPNRNIYGFLATV-DLDGRR-AVSL--GTSNIMLRGCELKNT-AWAIGVAVYTGRD 334

Query: 563 NKLQNFNHSGLVSRQ 607
            K+   N+SG  S++
Sbjct: 335 TKVM-LNNSGAPSKR 348


>02_04_0036 + 19097693-19098106
          Length = 137

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +2

Query: 398 KPVRNIFG--HLHSIEDLGGKKHAVRLLEYVPGELLKNCPLSEALLYQLG 541
           +PV  +F   H HS+   GG++ A RL+ +  G   +     +A   QLG
Sbjct: 68  RPVEGLFRYCHRHSVSAAGGERRAFRLVRFA-GAASEEIRRGDATFQQLG 116


>09_02_0198 -
           5705488-5705652,5706138-5706263,5706606-5706754,
           5706841-5706952,5707240-5707278
          Length = 196

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 681 SSXSESLITYLNFSSSGTIESIHMCCLLTRPEWL 580
           SS +E+L+    FS    ++  H+ CLLT+ EW+
Sbjct: 68  SSENETLVNMGGFS----VKKHHLSCLLTKDEWV 97


>03_06_0391 - 33577872-33578093,33578556-33579218
          Length = 294

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
 Frame = -3

Query: 173 DARPVASPARGRLSD------G*PAPAPVVASRQ 90
           D+ P+A+PAR R S         P+PAP V +RQ
Sbjct: 137 DSHPIATPARSRASQLEVVPAAGPSPAPPVEARQ 170


>03_02_0025 +
           5084003-5084303,5084449-5084639,5084793-5084873,
           5084972-5085319,5085409-5086293
          Length = 601

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 391 GHGASGQKIHNLILGLNNADVLRVNRIHDLEHVA 290
           GHG  G +  N +  +   DVL V R H +  ++
Sbjct: 359 GHGGGGVRCKNSLFRVKEGDVLVVPRFHPMAQIS 392


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,659,803
Number of Sequences: 37544
Number of extensions: 362595
Number of successful extensions: 1323
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)