Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_M17
(688 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC132753-1|AAI32754.1| 226|Homo sapiens LOC123688 protein protein. 96 1e-19
AK126453-1|BAC86556.1| 172|Homo sapiens protein ( Homo sapiens ... 77 6e-14
Y00762-1|CAA68731.1| 457|Homo sapiens protein ( Human mRNA for ... 33 0.72
X02502-1|CAA26344.1| 457|Homo sapiens acetylcholine receptor pr... 33 0.72
S77094-1|AAD14247.1| 457|Homo sapiens nicotinic acetylcholine r... 33 0.72
BC006314-1|AAH06314.1| 269|Homo sapiens CHRNA1 protein protein. 33 0.72
AC018890-1|AAY14687.1| 457|Homo sapiens unknown protein. 33 0.72
>BC132753-1|AAI32754.1| 226|Homo sapiens LOC123688 protein protein.
Length = 226
Score = 95.9 bits (228), Expect = 1e-19
Identities = 62/185 (33%), Positives = 88/185 (47%), Gaps = 7/185 (3%)
Frame = +2
Query: 128 RPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLITNHSPYGYVLKI 307
+P EQ L E ++G+ V + L YDD+N+ + T P YVLKI
Sbjct: 14 KPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSK-------TKDGPTEYVLKI 66
Query: 308 MNSIDSQNVGVVEAQNEIMNFLATRSVTCPKPVRNIFGHLHSIE--DLGG--KKHAVRLL 475
N+ S+N ++E QN I+ FL + S+ D G K + VRLL
Sbjct: 67 SNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKSYLVRLL 126
Query: 476 EYVPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNH---SGLVSRQHMWMLSMVPELEK 646
Y+PG + P+S LLY++G+ A LD LQ F+H S L +W L VP LEK
Sbjct: 127 TYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKNVPLLEK 186
Query: 647 FKYVI 661
+ Y +
Sbjct: 187 YLYAL 191
>AK126453-1|BAC86556.1| 172|Homo sapiens protein ( Homo sapiens
cDNA FLJ44489 fis, clone UTERU2035114. ).
Length = 172
Score = 77.0 bits (181), Expect = 6e-14
Identities = 50/153 (32%), Positives = 72/153 (47%), Gaps = 4/153 (2%)
Frame = +2
Query: 128 RPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLITNHSPYGYVLKI 307
+P EQ L E ++G+ V + L YDD+N+ + T P YVLKI
Sbjct: 14 KPTFSEEQASALVESVFGLKVSKVRPLPSYDDQNFHVYVSK-------TKDGPTEYVLKI 66
Query: 308 MNSIDSQNVGVVEAQNEIMNFLATRSVTCPKPVRNIFGHLHSIE--DLGG--KKHAVRLL 475
N+ S+N ++E QN I+ FL + S+ D G K + VRLL
Sbjct: 67 SNTKASKNPDLIEVQNHIIMFLKAAGFPTASVCHTKGDNTASLVSVDSGSEIKSYLVRLL 126
Query: 476 EYVPGELLKNCPLSEALLYQLGEFVANLDNKLQ 574
Y+PG + P+S LLY++G+ A LD LQ
Sbjct: 127 TYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQ 159
>Y00762-1|CAA68731.1| 457|Homo sapiens protein ( Human mRNA for
muscle acetylcholine receptor alpha-subunit. ).
Length = 457
Score = 33.5 bits (73), Expect = 0.72
Identities = 24/71 (33%), Positives = 35/71 (49%)
Frame = +2
Query: 95 AKLLLEPGQVIRPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLIT 274
AKL + V+RP+ DH QV + L I ++++ E+N N +L + N L
Sbjct: 29 AKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYN-LKW 87
Query: 275 NHSPYGYVLKI 307
N YG V KI
Sbjct: 88 NPDDYGGVKKI 98
>X02502-1|CAA26344.1| 457|Homo sapiens acetylcholine receptor
protein.
Length = 457
Score = 33.5 bits (73), Expect = 0.72
Identities = 24/71 (33%), Positives = 35/71 (49%)
Frame = +2
Query: 95 AKLLLEPGQVIRPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLIT 274
AKL + V+RP+ DH QV + L I ++++ E+N N +L + N L
Sbjct: 29 AKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYN-LKW 87
Query: 275 NHSPYGYVLKI 307
N YG V KI
Sbjct: 88 NPDDYGGVKKI 98
>S77094-1|AAD14247.1| 457|Homo sapiens nicotinic acetylcholine
receptor alpha subunit|AChR protein.
Length = 457
Score = 33.5 bits (73), Expect = 0.72
Identities = 24/71 (33%), Positives = 35/71 (49%)
Frame = +2
Query: 95 AKLLLEPGQVIRPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLIT 274
AKL + V+RP+ DH QV + L I ++++ E+N N +L + N L
Sbjct: 29 AKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYN-LKW 87
Query: 275 NHSPYGYVLKI 307
N YG V KI
Sbjct: 88 NPDDYGGVKKI 98
>BC006314-1|AAH06314.1| 269|Homo sapiens CHRNA1 protein protein.
Length = 269
Score = 33.5 bits (73), Expect = 0.72
Identities = 24/71 (33%), Positives = 35/71 (49%)
Frame = +2
Query: 95 AKLLLEPGQVIRPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLIT 274
AKL + V+RP+ DH QV + L I ++++ E+N N +L + N L
Sbjct: 29 AKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYN-LKW 87
Query: 275 NHSPYGYVLKI 307
N YG V KI
Sbjct: 88 NPDDYGGVKKI 98
>AC018890-1|AAY14687.1| 457|Homo sapiens unknown protein.
Length = 457
Score = 33.5 bits (73), Expect = 0.72
Identities = 24/71 (33%), Positives = 35/71 (49%)
Frame = +2
Query: 95 AKLLLEPGQVIRPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLIT 274
AKL + V+RP+ DH QV + L I ++++ E+N N +L + N L
Sbjct: 29 AKLFKDYSSVVRPVEDHRQVVEVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYN-LKW 87
Query: 275 NHSPYGYVLKI 307
N YG V KI
Sbjct: 88 NPDDYGGVKKI 98
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,366,283
Number of Sequences: 237096
Number of extensions: 2051960
Number of successful extensions: 5358
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5349
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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