Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_M17
         (688 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075459-1|AAL68272.1|  417|Drosophila melanogaster RE15159p pro...   207   9e-54
AE014134-2956|AAF53688.2|  417|Drosophila melanogaster CG31751-P...   206   3e-53
AE014134-2955|AAF53686.2|  417|Drosophila melanogaster CG31751-P...   206   3e-53
AY119188-1|AAM51048.1|  332|Drosophila melanogaster SD11293p pro...    29   7.9  
AY094669-1|AAM11022.1| 1122|Drosophila melanogaster GH03394p pro...    29   7.9  
AF247499-1|AAF63387.1|  332|Drosophila melanogaster replication ...    29   7.9  
AE014298-1481|AAF46623.2| 1122|Drosophila melanogaster CG32676-P...    29   7.9  
AE014296-2310|AAF49795.2| 3843|Drosophila melanogaster CG7002-PA...    29   7.9  
AE014134-1878|AAF52944.2|  332|Drosophila melanogaster CG5313-PA...    29   7.9  
AB035891-1|BAA88518.1| 3843|Drosophila melanogaster hemolectin p...    29   7.9  

>AY075459-1|AAL68272.1|  417|Drosophila melanogaster RE15159p
           protein.
          Length = 417

 Score =  207 bits (506), Expect = 9e-54
 Identities = 91/188 (48%), Positives = 131/188 (69%)
 Frame = +2

Query: 104 LLEPGQVIRPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLITNHS 283
           LL+PG  +RP ++ E VK L  RLYGI++ ++ E+  YDD+N+ + ED N+KNPLI  H 
Sbjct: 55  LLKPGSDVRPKVEPEDVKSLLRRLYGITISEVKEIVAYDDRNFFVKEDSNVKNPLIVTHC 114

Query: 284 PYGYVLKIMNSIDSQNVGVVEAQNEIMNFLATRSVTCPKPVRNIFGHLHSIEDLGGKKHA 463
           P+GYVLKI+NS+DS+    V+AQN+++ +L   SV CP+PV N  G  +S+E L G  + 
Sbjct: 115 PHGYVLKILNSLDSKKEDFVDAQNQMLLYLGKHSVKCPRPVANATGKYYSVERLNGNSNV 174

Query: 464 VRLLEYVPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNHSGLVSRQHMWMLSMVPELE 643
           VRLLE++PGE+    P+++ LLY+ GE++A LD  L+NF H    S + +WML  VPEL 
Sbjct: 175 VRLLEFIPGEIFHQVPVTKHLLYRSGEYLARLDRALKNFTHQAYESHKTLWMLQSVPELR 234

Query: 644 KFKYVIKD 667
           +F YV+KD
Sbjct: 235 QFLYVVKD 242


>AE014134-2956|AAF53688.2|  417|Drosophila melanogaster CG31751-PB,
           isoform B protein.
          Length = 417

 Score =  206 bits (502), Expect = 3e-53
 Identities = 90/188 (47%), Positives = 131/188 (69%)
 Frame = +2

Query: 104 LLEPGQVIRPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLITNHS 283
           LL+PG  +RP ++ E V+ L  RLYGI++ ++ E+  YDD+N+ + ED N+KNPLI  H 
Sbjct: 55  LLKPGSDVRPKVEPEDVESLLRRLYGITISEVKEIVAYDDRNFFVKEDSNVKNPLIVTHC 114

Query: 284 PYGYVLKIMNSIDSQNVGVVEAQNEIMNFLATRSVTCPKPVRNIFGHLHSIEDLGGKKHA 463
           P+GYVLKI+NS+DS+    V+AQN+++ +L   SV CP+PV N  G  +S+E L G  + 
Sbjct: 115 PHGYVLKILNSLDSKKEDFVDAQNQMLLYLGKHSVKCPRPVANATGKYYSVERLNGNSNV 174

Query: 464 VRLLEYVPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNHSGLVSRQHMWMLSMVPELE 643
           VRLLE++PGE+    P+++ LLY+ GE++A LD  L+NF H    S + +WML  VPEL 
Sbjct: 175 VRLLEFIPGEIFHQVPVTKHLLYRSGEYLARLDRALKNFTHQAYESHKTLWMLQSVPELR 234

Query: 644 KFKYVIKD 667
           +F YV+KD
Sbjct: 235 QFLYVVKD 242


>AE014134-2955|AAF53686.2|  417|Drosophila melanogaster CG31751-PA,
           isoform A protein.
          Length = 417

 Score =  206 bits (502), Expect = 3e-53
 Identities = 90/188 (47%), Positives = 131/188 (69%)
 Frame = +2

Query: 104 LLEPGQVIRPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLITNHS 283
           LL+PG  +RP ++ E V+ L  RLYGI++ ++ E+  YDD+N+ + ED N+KNPLI  H 
Sbjct: 55  LLKPGSDVRPKVEPEDVESLLRRLYGITISEVKEIVAYDDRNFFVKEDSNVKNPLIVTHC 114

Query: 284 PYGYVLKIMNSIDSQNVGVVEAQNEIMNFLATRSVTCPKPVRNIFGHLHSIEDLGGKKHA 463
           P+GYVLKI+NS+DS+    V+AQN+++ +L   SV CP+PV N  G  +S+E L G  + 
Sbjct: 115 PHGYVLKILNSLDSKKEDFVDAQNQMLLYLGKHSVKCPRPVANATGKYYSVERLNGNSNV 174

Query: 464 VRLLEYVPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNHSGLVSRQHMWMLSMVPELE 643
           VRLLE++PGE+    P+++ LLY+ GE++A LD  L+NF H    S + +WML  VPEL 
Sbjct: 175 VRLLEFIPGEIFHQVPVTKHLLYRSGEYLARLDRALKNFTHQAYESHKTLWMLQSVPELR 234

Query: 644 KFKYVIKD 667
           +F YV+KD
Sbjct: 235 QFLYVVKD 242


>AY119188-1|AAM51048.1|  332|Drosophila melanogaster SD11293p
           protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 308 MNSIDSQNVGVVEAQNEIMNFLATRSVTC 394
           +N+ D + +G+V  Q  I+NF +TR++ C
Sbjct: 81  LNASDDRGIGIVRGQ--ILNFASTRTIFC 107


>AY094669-1|AAM11022.1| 1122|Drosophila melanogaster GH03394p
           protein.
          Length = 1122

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 510 PCPKLSCISSENLSLISITNCRTSTTPVWSADSTCGCSLWSQSWKNSS 653
           P   LS + S  + + +I N    TT   S+ S+C CS  + S  +S+
Sbjct: 449 PIKSLSNLVSSPIKMTTIKNIPLPTTAATSSSSSCNCSSAAPSSSSST 496


>AF247499-1|AAF63387.1|  332|Drosophila melanogaster replication
           factor C subunit 3 protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 308 MNSIDSQNVGVVEAQNEIMNFLATRSVTC 394
           +N+ D + +G+V  Q  I+NF +TR++ C
Sbjct: 81  LNASDDRGIGIVRGQ--ILNFASTRTIFC 107


>AE014298-1481|AAF46623.2| 1122|Drosophila melanogaster CG32676-PA
           protein.
          Length = 1122

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 510 PCPKLSCISSENLSLISITNCRTSTTPVWSADSTCGCSLWSQSWKNSS 653
           P   LS + S  + + +I N    TT   S+ S+C CS  + S  +S+
Sbjct: 449 PIKSLSNLVSSPIKMTTIKNIPLPTTAATSSSSSCNCSSAAPSSSSST 496


>AE014296-2310|AAF49795.2| 3843|Drosophila melanogaster CG7002-PA
           protein.
          Length = 3843

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 293 YVLKIMN-SIDSQNVGVVEAQNEIMNFLATRSVTCPKPV 406
           ++LK  N S++++NV    A +E MNF A    +C K V
Sbjct: 876 HLLKTQNTSVEAENVACSGAVSESMNFAAPDDPSCTKAV 914


>AE014134-1878|AAF52944.2|  332|Drosophila melanogaster CG5313-PA
           protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 308 MNSIDSQNVGVVEAQNEIMNFLATRSVTC 394
           +N+ D + +G+V  Q  I+NF +TR++ C
Sbjct: 81  LNASDDRGIGIVRGQ--ILNFASTRTIFC 107


>AB035891-1|BAA88518.1| 3843|Drosophila melanogaster hemolectin
           protein.
          Length = 3843

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 293 YVLKIMN-SIDSQNVGVVEAQNEIMNFLATRSVTCPKPV 406
           ++LK  N S++++NV    A +E MNF A    +C K V
Sbjct: 876 HLLKTQNTSVEAENVACSGAVSESMNFAAPDDPSCTKAV 914


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,271,301
Number of Sequences: 53049
Number of extensions: 605239
Number of successful extensions: 1995
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1995
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)