Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_M17
(688 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41263-3|AAC24425.1| 361|Caenorhabditis elegans Hypothetical pr... 32 0.44
Z49132-8|CAA88987.1| 366|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 31 1.0
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 31 1.0
U12966-6|AAM48533.1| 783|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr... 30 1.8
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase... 30 1.8
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi... 30 1.8
Z97628-3|CAB10727.1| 819|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z79755-13|CAB02114.1| 819|Caenorhabditis elegans Hypothetical p... 29 3.1
L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting... 29 4.1
L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting... 29 4.1
Z78412-2|CAB01650.1| 169|Caenorhabditis elegans Hypothetical pr... 28 5.4
U00036-1|AAK29855.1| 152|Caenorhabditis elegans Hypothetical pr... 28 5.4
AF303258-1|AAG50216.1| 152|Caenorhabditis elegans 3H288 protein. 28 5.4
U21308-14|ABB88222.1| 429|Caenorhabditis elegans Tryptophan hyd... 28 7.2
U21308-13|ABB88221.1| 532|Caenorhabditis elegans Tryptophan hyd... 28 7.2
AF135186-1|AAD30115.1| 532|Caenorhabditis elegans tryptophan hy... 28 7.2
Z82262-4|CAE17770.1| 679|Caenorhabditis elegans Hypothetical pr... 27 9.5
AF003134-3|AAB54140.2| 314|Caenorhabditis elegans Hypothetical ... 27 9.5
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 27 9.5
>U41263-3|AAC24425.1| 361|Caenorhabditis elegans Hypothetical
protein T19D12.5 protein.
Length = 361
Score = 31.9 bits (69), Expect = 0.44
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -1
Query: 460 VFLATQVLDRVQVTEYIPYWLGTGHGASGQKIHNLILGLNNADVLRVNRIHDLEHVAVGR 281
+ L VL ++Q ++P G+GH I IL +N D+ + + L +VGR
Sbjct: 105 MILEQHVLAKMQGKPHVPMIYGSGHAEKYNFIIMQILSINVGDIKKSSPNKKLSQCSVGR 164
Query: 280 VV 275
++
Sbjct: 165 II 166
>Z49132-8|CAA88987.1| 366|Caenorhabditis elegans Hypothetical
protein ZK666.8 protein.
Length = 366
Score = 31.5 bits (68), Expect = 0.58
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = -1
Query: 460 VFLATQVLDRVQVTEYIPYWLGTGHGASGQKIHNLILGLNNADVLRVNRIHDLEHVAVGR 281
+ L VL ++Q ++P+ G+GH + I +L N D+ R++ L +VGR
Sbjct: 111 MILEQAVLVKLQGKPHVPWIFGSGHTENFNFIVLQLLSANLGDIRRMSPTRKLSKSSVGR 170
Query: 280 V 278
+
Sbjct: 171 I 171
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -1
Query: 454 LATQVLDRVQVTEYIPYWLGTGHGASGQKIHNLILGLNNADVLRVNRIHDLEHVAV 287
+ T V V + +WL G GA+ K+ L +N V+ N + +L+H+A+
Sbjct: 1930 VVTPVAIAVDADKGYVFWLDRGGGAADAKVARAGLDGSNPLVIASNDLAELDHIAI 1985
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -1
Query: 454 LATQVLDRVQVTEYIPYWLGTGHGASGQKIHNLILGLNNADVLRVNRIHDLEHVAV 287
+ T V V + +WL G GA+ K+ L +N V+ N + +L+H+A+
Sbjct: 1930 VVTPVAIAVDADKGYVFWLDRGGGAADAKVARAGLDGSNPLVIASNDLAELDHIAI 1985
>U12966-6|AAM48533.1| 783|Caenorhabditis elegans Hypothetical
protein F54D8.6 protein.
Length = 783
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 115 GAGYPSDNRPRAGEATGRASLRDIRAGPDRAERLRRQE 228
G+G P +RP G+ G R R G ER RR++
Sbjct: 609 GSGMPGIDRPPGGDRMGDKQRRGARGGVKERERKRRRD 646
>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical
protein ZK1067.1 protein.
Length = 1323
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 449 GKKHAVRLLEY-VPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNH 586
G K+ + +Y + G ++ CP + ++ G V N D + QN NH
Sbjct: 275 GPKNCIACSKYELDGICIETCPSRKIFNHKTGRLVFNPDGRYQNGNH 321
>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
protein.
Length = 1323
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 449 GKKHAVRLLEY-VPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNH 586
G K+ + +Y + G ++ CP + ++ G V N D + QN NH
Sbjct: 275 GPKNCIACSKYELDGICIETCPSRKIFNHKTGRLVFNPDGRYQNGNH 321
>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
kinase protein.
Length = 1374
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 449 GKKHAVRLLEY-VPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNH 586
G K+ + +Y + G ++ CP + ++ G V N D + QN NH
Sbjct: 326 GPKNCIACSKYELDGICIETCPSRKIFNHKTGRLVFNPDGRYQNGNH 372
>Z97628-3|CAB10727.1| 819|Caenorhabditis elegans Hypothetical
protein F43G9.12 protein.
Length = 819
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +1
Query: 145 RAGEATGRASLRDIRAGPDRAER 213
R GEA GRA+ RD R G R ER
Sbjct: 454 RMGEAAGRAAERDARRGRRRRER 476
>Z79755-13|CAB02114.1| 819|Caenorhabditis elegans Hypothetical
protein F43G9.12 protein.
Length = 819
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +1
Query: 145 RAGEATGRASLRDIRAGPDRAER 213
R GEA GRA+ RD R G R ER
Sbjct: 454 RMGEAAGRAAERDARRGRRRRER 476
>L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting
protein protein8, isoform b protein.
Length = 1780
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 488 PARTPAVLRRVSCHPGPR*SAGDRIYSVLA 399
P +TPA ++R+ GPR +G R+ S+L+
Sbjct: 1416 PPKTPASIKRLQPTEGPRTLSGQRMKSILS 1445
>L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting
protein protein8, isoform c protein.
Length = 1697
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 488 PARTPAVLRRVSCHPGPR*SAGDRIYSVLA 399
P +TPA ++R+ GPR +G R+ S+L+
Sbjct: 1333 PPKTPASIKRLQPTEGPRTLSGQRMKSILS 1362
>Z78412-2|CAB01650.1| 169|Caenorhabditis elegans Hypothetical
protein M176.3 protein.
Length = 169
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 464 VRLLEYVPGELLKNCPLSEALLYQLGEF 547
VR L+ PG +LK PL+EA +GEF
Sbjct: 134 VRCLQENPGRVLKCAPLTEAFEKCVGEF 161
>U00036-1|AAK29855.1| 152|Caenorhabditis elegans Hypothetical
protein R151.9 protein.
Length = 152
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 500 KNCPLSEALLYQLGEFVANLDNKLQNFNHS 589
K PLSE L QLGE N + +L F S
Sbjct: 6 KGVPLSELSLQQLGELQKNCEQELNFFQES 35
>AF303258-1|AAG50216.1| 152|Caenorhabditis elegans 3H288 protein.
Length = 152
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 500 KNCPLSEALLYQLGEFVANLDNKLQNFNHS 589
K PLSE L QLGE N + +L F S
Sbjct: 6 KGVPLSELSLQQLGELQKNCEQELNFFQES 35
>U21308-14|ABB88222.1| 429|Caenorhabditis elegans Tryptophan
hydroxylase protein1, isoform b protein.
Length = 429
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 251 NMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQNEIMNFLA 376
NMK P I ++PY ++++N+ S + V +++I N LA
Sbjct: 382 NMKRPFIVRYNPYTESVEVLNNSRSIMLAVNSLRSDI-NLLA 422
>U21308-13|ABB88221.1| 532|Caenorhabditis elegans Tryptophan
hydroxylase protein1, isoform a protein.
Length = 532
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 251 NMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQNEIMNFLA 376
NMK P I ++PY ++++N+ S + V +++I N LA
Sbjct: 485 NMKRPFIVRYNPYTESVEVLNNSRSIMLAVNSLRSDI-NLLA 525
>AF135186-1|AAD30115.1| 532|Caenorhabditis elegans tryptophan
hydroxylase protein.
Length = 532
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 251 NMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQNEIMNFLA 376
NMK P I ++PY ++++N+ S + V +++I N LA
Sbjct: 485 NMKRPFIVRYNPYTESVEVLNNSRSIMLAVNSLRSDI-NLLA 525
>Z82262-4|CAE17770.1| 679|Caenorhabditis elegans Hypothetical
protein C43F9.9 protein.
Length = 679
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 233 KLTEDPNMKNPLITNHSPYG--YVLKIMNSIDSQNVGVVEAQNEI 361
KLT ++ H YG Y+L ++ S+D N V A N+I
Sbjct: 298 KLTNLTMLEERRANEHRDYGSSYILPVLKSVDYDNTSVPLAFNDI 342
>AF003134-3|AAB54140.2| 314|Caenorhabditis elegans Hypothetical
protein ZC581.2 protein.
Length = 314
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = -1
Query: 460 VFLATQVLDRVQVTEYIPYWLGTGHGASGQKIHNLILGLNNADVLRVNRIHDLEHVAVGR 281
+ L +VL R+Q ++P +GH I +LG N D+ + + + L V R
Sbjct: 91 MILEQKVLYRLQGRPHVPIMCASGHTEQLNFIVMQLLGPNIGDLKKRSPVKRLSQTTVAR 150
Query: 280 VV 275
++
Sbjct: 151 IM 152
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Frame = +3
Query: 507 VPCPKLSCISSENLSLISITNCRTSTT---PVWSADSTCGC 620
+ CP +C + + + NC T++ P W D T C
Sbjct: 83 IGCPFRNCSALNEFGMTGLINCATTSQCIHPSWKCDGTNDC 123
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,781,879
Number of Sequences: 27780
Number of extensions: 300104
Number of successful extensions: 988
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -