Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_M12
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0048 + 22351788-22352177,22353175-22353711                       29   2.9  
09_01_0086 - 1225132-1225299,1225530-1225679,1227629-1228006,122...    28   8.8  
05_04_0101 - 18003528-18003655,18003951-18003997,18004046-180040...    28   8.8  

>04_04_0048 + 22351788-22352177,22353175-22353711
          Length = 308

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = +1

Query: 502 NNAYITTAISVASLLTENLLSHPFIVLRRQCQVHNNLRNYHIVPYTLLPVVVRLHRRQDV 681
           +N Y  T  SVAS L+   LS P  V++   ++ N  ++  ++       +V+  + + +
Sbjct: 214 DNLYAHTLASVASGLSATTLSCPADVIK--TRMMNQGKDAKVLYRNSYDCLVKTVKHEGL 271

Query: 682 TTLWKG 699
           T LWKG
Sbjct: 272 TALWKG 277


>09_01_0086 -
           1225132-1225299,1225530-1225679,1227629-1228006,
           1229103-1229150
          Length = 247

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
 Frame = +1

Query: 469 PLVMDENPDEDNNAYITTAISVASLLTENL--LSHPF---IVLR----RQCQVHNNLRNY 621
           P++ D N +EDN++     ++  S L  N+     P    ++LR    R+C VH  L N 
Sbjct: 26  PILFDNNQEEDNSSNPLNLLADTSELFRNMDDDESPLWLNVLLRTIFWRKCDVHEQLENA 85

Query: 622 H 624
           H
Sbjct: 86  H 86


>05_04_0101 -
           18003528-18003655,18003951-18003997,18004046-18004077,
           18004316-18004453,18004579-18004619,18004967-18005105,
           18010981-18011057,18011804-18011858,18012976-18013021,
           18013099-18013187,18013304-18013417
          Length = 301

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 439 TPITEEFQGPPLVMDENPDEDNNAYITTAISVASLLTENLLSHP 570
           TP  E+ + PP  + +      NAYIT A   A+L T     HP
Sbjct: 125 TPKDEDVRHPPRRVVQGGYGAYNAYITAATRYAALGTPTSYDHP 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,712,194
Number of Sequences: 37544
Number of extensions: 306144
Number of successful extensions: 534
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)