Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_M12
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032636-5|CAA21607.2|  500|Caenorhabditis elegans Hypothetical ...    65   6e-11
U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical p...    31   1.1  
Z46787-1|CAA86739.2|  360|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>AL032636-5|CAA21607.2|  500|Caenorhabditis elegans Hypothetical
           protein Y40B1B.8 protein.
          Length = 500

 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 27/68 (39%), Positives = 44/68 (64%)
 Frame = +1

Query: 526 ISVASLLTENLLSHPFIVLRRQCQVHNNLRNYHIVPYTLLPVVVRLHRRQDVTTLWKGIG 705
           + ++ ++T++L+SHP  VLRRQCQVH    + H+ P TL+PV+     +Q + T WKG  
Sbjct: 72  LGLSDVITKSLISHPCGVLRRQCQVHQFAGSLHLTPVTLIPVICNSVAKQGIQTFWKGAI 131

Query: 706 STCIVRGL 729
            + ++ GL
Sbjct: 132 GSSVLWGL 139


>U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical
           protein C32E8.11 protein.
          Length = 1927

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 383 IEKRMIYTIPVTSRFMGTILQLLKSFKDHLLLWMKTQMKI 502
           I +   + +P++ + M T L  L++F   LL W+ TQM +
Sbjct: 214 IRRSSNHNLPLSVKVMDTTLFALQNFSISLLTWLNTQMDV 253


>Z46787-1|CAA86739.2|  360|Caenorhabditis elegans Hypothetical
           protein C16C10.1 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/35 (28%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 499 DNNAYITTAISVASL-LTENLLSHPFIVLRRQCQV 600
           D+N ++ + +S A+  +  ++ +HPF V++  CQ+
Sbjct: 264 DHNPFVVSFVSGAAAGVVASIFTHPFDVIKTNCQI 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,668,414
Number of Sequences: 27780
Number of extensions: 316949
Number of successful extensions: 683
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)