Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_M07
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...    25   5.8  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    25   7.6  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 42  GXTVENSVVTASEVI-ESREIENVTTSVENIEDLESV 149
           G TV  S     E+I E   +ENV+ S  NI+ + +V
Sbjct: 129 GVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNV 165


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 51  VENSVVTASEVIESREIENVTTSVENIEDLES 146
           ++  ++T    +ES   E  TTSVE  E LES
Sbjct: 348 LDRQIMTIQIELESLRKETDTTSVERREKLES 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,222,480
Number of Sequences: 5004
Number of extensions: 16626
Number of successful extensions: 36
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)