Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_M07
         (468 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0069 + 505291-505327,505726-505956,506317-506652,507025-50...    28   3.3  
05_06_0020 + 24976990-24977167,24978763-24978874,24979634-249797...    27   5.7  
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535...    27   7.5  

>07_01_0069 +
           505291-505327,505726-505956,506317-506652,507025-507372,
           507735-508594,508902-508971,509157-509371,509477-509537,
           509606-509715,510644-510694,510794-510916
          Length = 813

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 27  CTSNEGXTVENSVVTASEVIESREIENVTTSVENIE 134
           CTS EG T   +    +E ++ RE    + SVE  +
Sbjct: 59  CTSGEGATTSTAPALEAEKVDKREAPAASASVEGTQ 94


>05_06_0020 +
           24976990-24977167,24978763-24978874,24979634-24979722,
           24979801-24979869,24979953-24980082,24980506-24980664,
           24980767-24981127,24981343-24981452,24981753-24981909,
           24983336-24983748,24983828-24984020,24984384-24986198
          Length = 1261

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 54  ENSVVTASEVIESREIENVTTSVENIED 137
           + + +  S+ + S++ E VTT VEN+E+
Sbjct: 484 DETAIDDSDGLSSKQAEEVTTKVENLEE 511


>06_03_0310 -
           19453047-19453160,19453240-19453338,19453441-19453513,
           19453598-19453708,19453795-19453956,19454064-19454340,
           19454542-19455160,19455256-19455471
          Length = 556

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 278 HIDTFIIFPFCPLLCFFDNFCCMITIF 198
           H  TFI+ PF  +L  FD   C + ++
Sbjct: 417 HYKTFILLPFHWVLLLFDLSACTVNVY 443


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,730,662
Number of Sequences: 37544
Number of extensions: 80285
Number of successful extensions: 223
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)