Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_M06
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    91   1e-19
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    61   1e-10
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    33   0.032
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    30   0.29 
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    29   0.68 
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    29   0.90 
SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase Mag1|Schizo...    27   2.1  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    27   2.1  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    26   6.3  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   8.4  

>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 1/129 (0%)
 Frame = +3

Query: 342 LEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ-IGDWLKKMLHYNLVGGKHTRGITTVIS 518
           +  ++++  F+  LP  +  + N  K   +P  + +W K  L +N +GGK+ RG++ + S
Sbjct: 1   MSAVDKRAKFESALPVFVDEIVNYLKTINIPDDVTEWYKNSLFHNTLGGKYNRGLSVIDS 60

Query: 519 YKTIEKPEKVTEHTLKMACKLGWCVEMFXAYCIVLDDIMDGSSVRRGMPCWYRRPEVGIT 698
           Y+ +     + E     A  LGW VE+  ++ ++ DDIMD S  RRG PCWY  P VG  
Sbjct: 61  YEIL-LGHPLDEAAYMKAAVLGWMVELLQSFFLIADDIMDASKTRRGQPCWYLMPGVG-N 118

Query: 699 CXFNDSLLI 725
              ND+ ++
Sbjct: 119 IAINDAFMV 127


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
 Frame = +3

Query: 360 KKMFDDLLPEVIMTLQN-KSKLSEVPQIGDWLKKMLHYNLVGGKHTRGITTVISYKTIEK 536
           KK   D  P V+  ++     +   P+  + L   +  N +GGK+ RG+  + S  ++  
Sbjct: 12  KKRLLDFFPVVLEGIREILESMQYFPEETEKLLYSIKRNTLGGKNNRGLAVLQSLTSLIN 71

Query: 537 PEKVTEHTLKMACKLGWCVEMFXAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCXFNDS 716
            E + E   + A  LGW +E+     ++ DDIMD S  RRG+ CWY    VG+    N+S
Sbjct: 72  RE-LEEAEFRDAALLGWLIEILQGCFLMADDIMDQSIKRRGLDCWYL--VVGVRRAINES 128

Query: 717 LLI 725
            L+
Sbjct: 129 QLL 131


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 33.5 bits (73), Expect = 0.032
 Identities = 22/66 (33%), Positives = 34/66 (51%)
 Frame = +3

Query: 306 NNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDWLKKMLHYNLVGG 485
           N S+N T +  NL+ +  KK    +LP   +TLQ K KL      G   K  LH +++ G
Sbjct: 254 NISSNSTVSDLNLKTL--KKRLRGVLPPSFLTLQEKKKLE---NRGVKKKTSLHKSVIEG 308

Query: 486 KHTRGI 503
           +  +G+
Sbjct: 309 EKIKGV 314


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = -3

Query: 395 NYFREEIVEHF---LFINYFEIFXGCRHICAIILISDQLWPIFVCNF 264
           N F ++++E+F   + ++YF IF    H+C+    S  +W   +C+F
Sbjct: 504 NSFNQKLMEYFKGFVKLDYFSIFITFLHVCSFGSNSFTVWEDRLCHF 550


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 419 LGFVL*CHNYFREEIVEHFLFINYFEIFXGCRHICAIILISDQLWP 282
           LGF +  H+Y       HF+  ++  +F  CR I   +L S  L P
Sbjct: 97  LGFCVLAHDYVNLINARHFMIEHFLSLFAFCRTILFSLLTSFLLVP 142


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 96  WRPTILSIEDYRRQGGRCLYYRKEYTKIIG 7
           W  T+L      +QGG C Y+R+ Y ++IG
Sbjct: 578 WDRTLLCDGYLCQQGGDCPYWRRRYFQLIG 607


>SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase
           Mag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 585 WCVEMFXAYCIVLDDIM--DGSSVRRGMPCWYRRPEV 689
           W VEM   + +  DD+M  D  S+R G    +R P++
Sbjct: 150 WTVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRLPKI 186


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 549 TEHTLKMACKLGWCVEMFXAYCIVLDDIMDGSSVRRGMP 665
           T   L    +L    EM     ++ DD++D ++VRRG P
Sbjct: 112 TGQILPSQLRLAQITEMIHIASLLHDDVIDHANVRRGSP 150


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 426 EVPQIGDWLKKMLHYNLVGGKHTRGI 503
           E+ +I D+L+   H+  +GGK  RG+
Sbjct: 278 ELEEIVDFLRDPTHFTRLGGKLPRGV 303


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 541 SGFSIVLYEITVVIPLVCLPPTK 473
           +G    L+E++V +PL  +PP+K
Sbjct: 375 TGVEAPLFELSVSMPLTLIPPSK 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,142,003
Number of Sequences: 5004
Number of extensions: 66464
Number of successful extensions: 178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)