Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_M06
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)   110   1e-24
SB_54381| Best HMM Match : Trigger_C (HMM E-Value=0.55)                29   2.9  
SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32)                 28   8.9  
SB_8102| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  

>SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)
          Length = 303

 Score =  110 bits (265), Expect = 1e-24
 Identities = 54/124 (43%), Positives = 76/124 (61%), Gaps = 3/124 (2%)
 Frame = +3

Query: 363 KMFDDLLPEVIMTLQNKSKLSEVPQIGD---WLKKMLHYNLVGGKHTRGITTVISYKTIE 533
           K+FDD  P  +  L  + +      IGD   WL+++L YN+ GGK  RG++ + S + + 
Sbjct: 19  KLFDDAFPGFVNDLVQEEENDLA--IGDSIKWLREVLEYNVPGGKRNRGLSVIGSLRHLI 76

Query: 534 KPEKVTEHTLKMACKLGWCVEMFXAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCXFND 713
           + E  T+  L++A  LGWCVE F A+ +V DDIMD S  RRG PCWYR+PEVG     ND
Sbjct: 77  REEHFTDEHLRVALLLGWCVEWFQAFFLVADDIMDQSMTRRGQPCWYRQPEVG-NIAIND 135

Query: 714 SLLI 725
            ++I
Sbjct: 136 GIMI 139


>SB_54381| Best HMM Match : Trigger_C (HMM E-Value=0.55)
          Length = 607

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
 Frame = +3

Query: 252 KITRKVTYKYWPQLIRYKNNSANMTTASK-NLEIINE--KKMFDDLLPEVIMTLQNKSKL 422
           K+T KVTYK   ++ +   N       +K   E+ N+   K+ + +  +V   + NK   
Sbjct: 340 KVTNKVTYKVANKVTKKVTNKVTYNVTNKVTNEVTNKMTNKVTNKMTNKVTNKVTNKVTK 399

Query: 423 SEVPQIGDWLKKMLHYNLVGGKHTRGITTVISYKTIEK-PEKVTEH-TLKMACKLGWCV 593
               ++ + +   +  N V  K T  +T +++YK   K   KV    T K+A K+ + V
Sbjct: 400 MVTYKVANKVTNKV-ANKVTNKVTNKVTKMVTYKVANKVTNKVANKVTNKVANKVTYKV 457


>SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +3

Query: 354 NEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDWLKKMLHYNLVGGKHT 494
           N+ K F  L  EV   +Q+K       Q  DWL+KML  N+  G  T
Sbjct: 10  NKHKSFG-LTAEVNRKIQSKYDTELEMQCRDWLEKMLGENIEWGVET 55


>SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32)
          Length = 1241

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/56 (19%), Positives = 29/56 (51%)
 Frame = +3

Query: 276 KYWPQLIRYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIG 443
           ++W  + + KN+   +     +  II++ K+  +LL +   ++     L+++P +G
Sbjct: 375 RFWSYIKQLKNDDPGVADFKVDDRIISDGKLKSELLSKQFCSVFTVEDLTDIPSVG 430


>SB_8102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 690

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 557 YFENGL*TGMVCRNVSXILHCAG*HYGWFKRSTRHAL 667
           +  NGL  G     +S  L  AG H  +F RSTR +L
Sbjct: 578 WMSNGLSQGTTGAKLSPSLSIAGWHSAYFVRSTRRSL 614


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,267,494
Number of Sequences: 59808
Number of extensions: 474339
Number of successful extensions: 1246
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)