Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_M03
         (780 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7KCY9 Cluster: Ribosomal protein L23a; n=1; Heliconius...    63   9e-09
UniRef50_UPI00015B567B Cluster: PREDICTED: similar to ribosomal ...    50   5e-05
UniRef50_Q4GXF0 Cluster: Ribosomal protein L23Ae; n=1; Dascillus...    48   2e-04
UniRef50_Q49549 Cluster: P3; n=1; Mycoplasma hyorhinis|Rep: P3 -...    38   0.21 
UniRef50_P62750 Cluster: 60S ribosomal protein L23a; n=126; Euka...    36   1.5  
UniRef50_Q12IA3 Cluster: Putative uncharacterized protein precur...    33   6.1  
UniRef50_A6NCG1 Cluster: Uncharacterized protein ENSP00000339037...    33   6.1  
UniRef50_P04456 Cluster: 60S ribosomal protein L25; n=10; Fungi/...    33   6.1  
UniRef50_A3ZU56 Cluster: Putative uncharacterized protein; n=1; ...    33   8.0  

>UniRef50_A7KCY9 Cluster: Ribosomal protein L23a; n=1; Heliconius
           melpomene|Rep: Ribosomal protein L23a - Heliconius
           melpomene
          Length = 221

 Score = 62.9 bits (146), Expect = 9e-09
 Identities = 33/56 (58%), Positives = 35/56 (62%)
 Frame = +3

Query: 612 SKLKIAXXXXXXXXXXXXXXXXPVTKALKAXRKVVKGEHGKRVRKIRNSVHFRRXK 779
           +KLKIA                PV KALK  +KVVKGEHGKRVRKIR SVHFRR K
Sbjct: 129 AKLKIAPKPKKTGIKGQKKVVKPVVKALKIQKKVVKGEHGKRVRKIRTSVHFRRPK 184


>UniRef50_UPI00015B567B Cluster: PREDICTED: similar to ribosomal
           protein L23Ae; n=1; Nasonia vitripennis|Rep: PREDICTED:
           similar to ribosomal protein L23Ae - Nasonia vitripennis
          Length = 247

 Score = 50.4 bits (115), Expect = 5e-05
 Identities = 23/34 (67%), Positives = 26/34 (76%)
 Frame = +3

Query: 678 PVTKALKAXRKVVKGEHGKRVRKIRNSVHFRRXK 779
           PV KALKA +K++KG  G RVRKIR SVHF R K
Sbjct: 108 PVQKALKAQKKILKGVQGSRVRKIRTSVHFHRPK 141


>UniRef50_Q4GXF0 Cluster: Ribosomal protein L23Ae; n=1; Dascillus
           cervinus|Rep: Ribosomal protein L23Ae - Dascillus
           cervinus
          Length = 212

 Score = 48.4 bits (110), Expect = 2e-04
 Identities = 22/34 (64%), Positives = 24/34 (70%)
 Frame = +3

Query: 678 PVTKALKAXRKVVKGEHGKRVRKIRNSVHFRRXK 779
           PV KAL   +KV+KG  G R RKIRNSVHF R K
Sbjct: 141 PVQKALNVQKKVIKGPFGTRARKIRNSVHFHRPK 174


>UniRef50_Q49549 Cluster: P3; n=1; Mycoplasma hyorhinis|Rep: P3 -
           Mycoplasma hyorhinis
          Length = 1187

 Score = 38.3 bits (85), Expect = 0.21
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 164 TCVSQNTGTCPESSCACPETSCACPE 241
           +C  ++ G C E SCACP T+CAC E
Sbjct: 380 SCAQEHCG-CQEESCACPNTTCACTE 404



 Score = 38.3 bits (85), Expect = 0.21
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 164 TCVSQNTGTCPESSCACPETSCACPE 241
           +C  ++ G C E SCACP T+CAC E
Sbjct: 836 SCAQEHCG-CQEESCACPNTTCACTE 860



 Score = 34.3 bits (75), Expect = 3.5
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 164 TCVSQN-TGTCPESSCACPETSCACPET 244
           TC  Q  T +C +  C C E SCACP T
Sbjct: 371 TCGCQEATCSCAQEHCGCQEESCACPNT 398



 Score = 34.3 bits (75), Expect = 3.5
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 164 TCVSQN-TGTCPESSCACPETSCACPET 244
           TC  Q  T +C +  C C E SCACP T
Sbjct: 827 TCGCQEATCSCAQEHCGCQEESCACPNT 854


>UniRef50_P62750 Cluster: 60S ribosomal protein L23a; n=126;
           Eukaryota|Rep: 60S ribosomal protein L23a - Homo sapiens
           (Human)
          Length = 156

 Score = 35.5 bits (78), Expect = 1.5
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = +3

Query: 687 KALKAXRKVVKGEHGKRVRKIRNSVHFRRXK 779
           KALKA + V+KG H  + +KIR S  FRR K
Sbjct: 20  KALKAKKAVLKGVHSHKKKKIRTSPTFRRPK 50


>UniRef50_Q12IA3 Cluster: Putative uncharacterized protein
           precursor; n=1; Shewanella denitrificans OS217|Rep:
           Putative uncharacterized protein precursor - Shewanella
           denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
          Length = 149

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +2

Query: 173 SQNTGTCPESSCACPETSC 229
           SQN+G C E+SC CP +SC
Sbjct: 87  SQNSGDCCENSCRCPVSSC 105


>UniRef50_A6NCG1 Cluster: Uncharacterized protein ENSP00000339037;
           n=99; Fungi/Metazoa group|Rep: Uncharacterized protein
           ENSP00000339037 - Homo sapiens (Human)
          Length = 156

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +3

Query: 687 KALKAXRKVVKGEHGKRVRKIRNSVHFRRXK 779
           KALKA + V+KG H  + +KI  S  FRR K
Sbjct: 20  KALKAKKAVLKGVHNHKKKKIHTSPTFRRPK 50


>UniRef50_P04456 Cluster: 60S ribosomal protein L25; n=10;
           Fungi/Metazoa group|Rep: 60S ribosomal protein L25 -
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 142

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +3

Query: 678 PVTKALKAXRKVVKGEHGKRVRKIRNSVHFRRXK 779
           P  KA  A + VVKG +GK+  K+R S  FR  K
Sbjct: 3   PSAKATAAKKAVVKGTNGKKALKVRTSATFRLPK 36


>UniRef50_A3ZU56 Cluster: Putative uncharacterized protein; n=1;
           Blastopirellula marina DSM 3645|Rep: Putative
           uncharacterized protein - Blastopirellula marina DSM
           3645
          Length = 155

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 164 TCVSQNTGTCPESSCACPETSCACPE 241
           TC +      PE +C  PE SCA PE
Sbjct: 94  TCCAPEPACAPEPTCCAPEPSCAAPE 119


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 340,288,012
Number of Sequences: 1657284
Number of extensions: 4050464
Number of successful extensions: 12792
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12758
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65850543200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)