Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_M03
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    33   0.061
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    32   0.080
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   5.3  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 32.7 bits (71), Expect = 0.061
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = +3

Query: 681 VTKALKAXRKVVKGEHGKRVRKIRNSVHFRRXK 779
           V KA  A + V KG H K  RK+R S  FRR K
Sbjct: 3   VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPK 35


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 32.3 bits (70), Expect = 0.080
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +3

Query: 681 VTKALKAXRKVVKGEHGKRVRKIRNSVHFRRXK 779
           V KA  A + V KG H K  +K+R S  FRR K
Sbjct: 3   VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPK 35


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 581 SQNCQTQASSFQIEDCTEAQKDWD*GTKKS 670
           S+NCQ  +    +++C EA  D D G  K+
Sbjct: 479 SENCQKLSKQIPLDECNEALFDDDNGDYKA 508


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,401,872
Number of Sequences: 5004
Number of extensions: 16884
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)