Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_M03
         (780 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT029645-1|ABL75704.1|  269|Drosophila melanogaster IP17216p pro...    39   0.009
AE014296-329|AAF47545.1|  277|Drosophila melanogaster CG7977-PA ...    39   0.009
DQ450529-1|ABE27283.1|  277|Drosophila melanogaster L23A ribosom...    38   0.015
AF080130-1|AAD19340.1|  269|Drosophila melanogaster ribosomal pr...    32   0.77 
BT003457-1|AAO39460.1|  985|Drosophila melanogaster RH34107p pro...    31   1.3  
AE014297-1126|AAF54512.1|  985|Drosophila melanogaster CG3999-PA...    31   1.3  

>BT029645-1|ABL75704.1|  269|Drosophila melanogaster IP17216p
           protein.
          Length = 269

 Score = 38.7 bits (86), Expect = 0.009
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = +3

Query: 690 ALKAXRKVVKGEHGKRVRKIRNSVHFRR 773
           A K  +K++KG  G R RKIR +VHFRR
Sbjct: 134 AKKVQKKIIKGAFGTRARKIRTNVHFRR 161


>AE014296-329|AAF47545.1|  277|Drosophila melanogaster CG7977-PA
           protein.
          Length = 277

 Score = 38.7 bits (86), Expect = 0.009
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = +3

Query: 690 ALKAXRKVVKGEHGKRVRKIRNSVHFRR 773
           A K  +K++KG  G R RKIR +VHFRR
Sbjct: 142 AKKVQKKIIKGAFGTRARKIRTNVHFRR 169


>DQ450529-1|ABE27283.1|  277|Drosophila melanogaster L23A ribosomal
           protein naturalvariant protein.
          Length = 277

 Score = 37.9 bits (84), Expect = 0.015
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = +3

Query: 690 ALKAXRKVVKGEHGKRVRKIRNSVHFRR 773
           A K  +K++KG  G R RKIR +VHFRR
Sbjct: 142 AKKVQKKIIKGAFGTRARKIRANVHFRR 169


>AF080130-1|AAD19340.1|  269|Drosophila melanogaster ribosomal
           protein L23a protein.
          Length = 269

 Score = 32.3 bits (70), Expect = 0.77
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +3

Query: 690 ALKAXRKVVKGEHGKRVRKIRNSVHFRR 773
           A K  +K++K   G R RKIR +VHFRR
Sbjct: 135 AKKVQKKIIKA-FGTRARKIRTNVHFRR 161


>BT003457-1|AAO39460.1|  985|Drosophila melanogaster RH34107p
           protein.
          Length = 985

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 728 MFTFYNLPXSLKCFSNRFHYFFLSLNPSLFG 636
           M+  Y+ P  LK  +NR H+F L+L   + G
Sbjct: 368 MYAIYHGPEGLKAMANRIHHFTLTLQTGVLG 398


>AE014297-1126|AAF54512.1|  985|Drosophila melanogaster CG3999-PA
           protein.
          Length = 985

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 728 MFTFYNLPXSLKCFSNRFHYFFLSLNPSLFG 636
           M+  Y+ P  LK  +NR H+F L+L   + G
Sbjct: 368 MYAIYHGPEGLKAMANRIHHFTLTLQTGVLG 398


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,502,591
Number of Sequences: 53049
Number of extensions: 197851
Number of successful extensions: 638
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3623012976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)