Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_M03
         (780 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...    37   0.014
Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...    34   0.13 
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    28   8.6  
AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical ...    28   8.6  

>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = +3

Query: 687 KALKAXRKVVKGEHGKRVRKIRNSVHFRR 773
           KAL A +KVVKG+     R++R SVHFRR
Sbjct: 11  KALDAKKKVVKGKRTTHRRQVRTSVHFRR 39


>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +3

Query: 681 VTKALKAXRKVVKGEHGKRVRKIRNSVHFRRXK 779
           V KA++A + VVKG      + +R SVHFRR K
Sbjct: 8   VGKAIQAKKAVVKGSKTNVRKNVRTSVHFRRPK 40


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 740  YSLPMFTFYNLPXSLKCFSNRFHYFF 663
            +S  +  FYNL  S KCFS  FH+ F
Sbjct: 3293 FSKKVTFFYNLLQS-KCFSKHFHWLF 3317


>AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical
           protein C09D4.2 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 170 VSQNTGTCPESSCACPETSCAC 235
           +S  TG+  E+ CAC   +CAC
Sbjct: 126 LSLRTGSSNENGCACVHGNCAC 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,101,692
Number of Sequences: 27780
Number of extensions: 108033
Number of successful extensions: 364
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)