Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_M01
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804 29 4.2
04_04_0201 - 23555336-23556008,23556097-23556258,23556353-235572... 29 4.2
03_03_0216 + 15495395-15495566,15495648-15495733,15495824-154958... 29 4.2
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 29 5.5
03_05_0136 + 21158917-21159939,21160183-21160241,21160259-211602... 29 5.5
01_01_0092 + 722744-723459,723542-723711,723792-724885 29 5.5
12_01_1111 + 11842837-11843094,11843142-11843255,11843267-118442... 28 9.6
06_03_0683 - 23490215-23490997 28 9.6
05_03_0501 + 14744913-14745107,14745545-14745571,14746002-147460... 28 9.6
>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
Length = 1209
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Frame = -2
Query: 677 VPVLQSLPLELMSSAPES*K----RPRFLLSSFXQARPS-CTERQSR 552
V VLQS+P + SS+P S K P F+ SS ++R S C ++ R
Sbjct: 256 VVVLQSVPTQQQSSSPSSSKLRADAPEFIPSSIKKSRASRCKAKKKR 302
>04_04_0201 -
23555336-23556008,23556097-23556258,23556353-23557206,
23557452-23557613,23558197-23558649,23559729-23559788,
23559983-23560058,23561546-23561593,23561948-23562022,
23562067-23562494
Length = 996
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +2
Query: 416 TYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVXK 595
T S+ V+ AA + +G + VT+ +S+ VD+ V+P+ A + DE K
Sbjct: 659 TASMQVHEGAAAAQLGESPEG-VDVTSAVSDEVDRDDKATHVLPLAAAAADGESDELERK 717
Query: 596 ----TTVETLDVST 625
+ T+D+ST
Sbjct: 718 RRKLDSCATMDMST 731
>03_03_0216 +
15495395-15495566,15495648-15495733,15495824-15495874,
15496005-15496390,15496760-15496898,15497540-15497595,
15497712-15497782,15497876-15498081
Length = 388
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 559 WRSVQEGRACXKDDSRNLGRFYDSGAEDISSSGSDCSTG 675
WR + +A D LG+ Y +E++S+S SDC +G
Sbjct: 2 WRFLGASKALTSSDVWFLGKCYKLSSEELSNS-SDCESG 39
>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
3764013-3764961,3766967-3767064,3768144-3768284,
3768758-3768874,3768924-3769013,3769014-3771818
Length = 1632
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +1
Query: 169 HVPMAEPFAI-QSVCSFVEADPHFCGHRAKN 258
HVPM EP I S C V AD G KN
Sbjct: 1336 HVPMQEPLRIASSCCEIVNADQVCAGEVGKN 1366
>03_05_0136 +
21158917-21159939,21160183-21160241,21160259-21160294,
21160345-21160387,21160582-21160698,21162090-21162179,
21162329-21162436,21162547-21162588
Length = 505
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +1
Query: 616 RFYDSGAEDISSSGSDCSTGTRG 684
R D+GA D++SSGS+CS +RG
Sbjct: 176 RRLDAGA-DVASSGSECSDASRG 197
>01_01_0092 + 722744-723459,723542-723711,723792-724885
Length = 659
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 146 VSITDDQFTFPWLNLSPFSLFAPLWKLIPTFVDIGPRIY 262
+S + +F NL S PLW +P F D+G ++Y
Sbjct: 92 ISYNESRFWVVDANLDNSSCPLPLWNNLPYFNDMGTKLY 130
>12_01_1111 +
11842837-11843094,11843142-11843255,11843267-11844247,
11861747-11862025,11862998-11863098,11863723-11863792,
11863947-11863974,11864057-11864114,11864440-11864536
Length = 661
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = -2
Query: 677 VPVLQSLPLELMSSAPES*K----RPRFLLSSFXQARPSCTERQSRQ*VQ 540
V VLQS+P + SS+P S K P F+ SS ++R S + ++ +Q
Sbjct: 241 VVVLQSVPTQQQSSSPSSSKLRADAPEFIPSSIKKSRASRRRAKKKRTLQ 290
>06_03_0683 - 23490215-23490997
Length = 260
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = -1
Query: 153 METGCAITSLSRAGKAVTVAKPAKAMKTAKRRGENIFLDIRVSNS 19
++TG ++L++ + +T K + + +R E I++D+R+ S
Sbjct: 76 IKTGMPTSTLTKHLRGLTSKGVLKVVNSVHKRAEKIYMDVRIDPS 120
>05_03_0501 +
14744913-14745107,14745545-14745571,14746002-14746097,
14746479-14746769
Length = 202
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +1
Query: 571 QEGRACXKDDSRNLGRFYDSGAED---ISSSGSDCSTGTRGEERTDHALRTR*SDRKRQ 738
++G K D R++G D GA +SSSG +TG G+ + + A +D++ Q
Sbjct: 57 EKGEKLTKKDIRSIGIGMDLGAASAVAVSSSGGRRATGEIGQRQVESAGELGLTDKQLQ 115
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,593,089
Number of Sequences: 37544
Number of extensions: 294959
Number of successful extensions: 1006
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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