Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_M01
(783 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 32 0.46
SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08) 30 1.8
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59) 29 3.2
SB_12805| Best HMM Match : LicD (HMM E-Value=9.7e-06) 29 3.2
SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047) 29 5.6
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0) 28 7.4
SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3) 28 9.8
SB_41830| Best HMM Match : S4 (HMM E-Value=1.6e-12) 28 9.8
SB_22969| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_18879| Best HMM Match : Pkinase_Tyr (HMM E-Value=7e-36) 28 9.8
SB_867| Best HMM Match : Leo1 (HMM E-Value=0) 28 9.8
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 32.3 bits (70), Expect = 0.46
Identities = 26/93 (27%), Positives = 44/93 (47%)
Frame = +2
Query: 347 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTK 526
I + G ++ E +H S+F +Y+LP + V++ +T DG L + A +E +
Sbjct: 64 IKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVSTVSSRITGDGLLHIEALKAE----PQ 118
Query: 527 NTERVVPIVETGAPYKKDEPVXKTTVETLDVST 625
TE + TG+ + K TLDVS+
Sbjct: 119 ETEVSLVGASTGSAGDIAKIDDKRFTVTLDVSS 151
>SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08)
Length = 857
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +1
Query: 592 KDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEERTDHALRTR*SDRKRQRDPTRKRSFCL 771
KD+ RNLG+ D E+ S G++ G + E T + + Q P ++SF L
Sbjct: 303 KDEDRNLGKNKDERHEEY-SKGNENMDGIKPFELTPEIEAIQSTTTDEQNKPNTEQSFLL 361
Query: 772 SD 777
S+
Sbjct: 362 SE 363
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 553 RDWRSVQEGRACXKDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEER 693
R WR+V R C + S + D GA + + + C TGT E R
Sbjct: 343 RVWRTVPPQRVCLEVPSEKARKIPDDGALTVRTEATGC-TGTANEIR 388
>SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)
Length = 625
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 419 YSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPY 571
YS+ S + SD YL+ TA +SE +D + R V I TG P+
Sbjct: 171 YSITRGHSVMSEHLNIISDRYLLFTAQVSEGLDFSDINGRAVVI--TGLPF 219
>SB_12805| Best HMM Match : LicD (HMM E-Value=9.7e-06)
Length = 371
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = -1
Query: 258 ILGPMSTKVGISFHKGANRLNGERFSHGNVNWSSVMETGCAITSLSRAGKAVTVAKPAKA 79
I+GP+ K G F R G F NW V+ T T +S A + V +PA
Sbjct: 217 IMGPLWFKHGDIFPVARLRFEGFMFDVPR-NWKQVLRTLYGRTGISAAVPTLMVVEPAPT 275
Query: 78 MK 73
K
Sbjct: 276 QK 277
>SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 633
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 676 TRGEERTDHALRTR*SDRKRQRDPTRKRSF 765
TRG ER++HA + RK +++ T+ SF
Sbjct: 240 TRGHERSEHAEKAAELKRKEKKEATKHNSF 269
>SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047)
Length = 405
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = -3
Query: 265 SVDSWPDVHKSGDQLPQRSKQTEWRKVQPWEREL--VICNGDGLRD 134
+V S+ + KSG +P R++ T +R PW +E+ ++C D L +
Sbjct: 135 AVSSYRFLCKSGHYIPLRTRSTLFR--NPWTKEIEFLVCTNDVLTE 178
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 422 SLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVXKT 598
++PVN+ A G +VT ++ V + T V P+V A K EP +T
Sbjct: 1250 TMPVNTQAVVANMVTQPHGTTIVTPAVANMVTQPHGTTIVTPVVTQSAVATK-EPARRT 1307
>SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)
Length = 1035
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 359 GSQEAKEDDHDVFASQFFHTYSLPVNSSAA 448
G+ +E+D DV+A Y +P N SAA
Sbjct: 245 GTGVFEEEDDDVYAQDIMSNYDIPKNISAA 274
>SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3)
Length = 444
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 137 AQPVSITDDQFTFPWLNLSPFSLFAPLWKLIPTFVDIGP 253
+ P + T DQ + + + SPFS APL P FVD P
Sbjct: 219 SSPETFTSDQLSPTYSSPSPFSSKAPL----PVFVDFTP 253
>SB_41830| Best HMM Match : S4 (HMM E-Value=1.6e-12)
Length = 275
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 258 ILGPMSTKVGISFHKGANRLNGERFSH 178
+ G T+VGI H G NR+ + F H
Sbjct: 209 VAGEKKTEVGIKIHSGRNRIVRKIFEH 235
>SB_22969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 817
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +2
Query: 383 DHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETG 562
D DV+A Q YS PV + + + G L T + +KT+N + I+E
Sbjct: 61 DFDVYAHQSETEYSGPVPDPNSRPSGTYSKIGTLNATKLWTSFGNKTQNVQTFSLILENS 120
Query: 563 APY 571
PY
Sbjct: 121 KPY 123
>SB_18879| Best HMM Match : Pkinase_Tyr (HMM E-Value=7e-36)
Length = 617
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +2
Query: 383 DHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETG 562
D DV+A Q YS PV + + G L T +KT+N + + I+E
Sbjct: 137 DFDVYAHQSETQYSGPVPDPNNSPSGTCSKIGTLNATELSPSLGNKTQNVQTLSLILENS 196
Query: 563 APY 571
PY
Sbjct: 197 KPY 199
>SB_867| Best HMM Match : Leo1 (HMM E-Value=0)
Length = 591
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 616 RFYDSGAEDISSSG-SDCSTGTRGEERTDHALRTR*SDRKRQRDPTRKR 759
R Y S +D G D + GEER +A + S+ + +P+RKR
Sbjct: 517 RAYSSEEDDGEEEGLGDLESDNEGEERLMNAKEGKDSEEESIEEPSRKR 565
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,207,928
Number of Sequences: 59808
Number of extensions: 340234
Number of successful extensions: 1170
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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