Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_L20
         (742 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      27   0.21 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      27   0.21 
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    23   2.6  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   4.5  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   6.0  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   6.0  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    22   6.0  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   6.0  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 394 RKYH*IVKRSQKRYTKVGQYEKLHHFHLSPQW 299
           R++H + +  Q +Y ++ + E+  H  L P W
Sbjct: 515 RRWHALGREEQAKYYELARRERQLHMQLYPDW 546


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 394 RKYH*IVKRSQKRYTKVGQYEKLHHFHLSPQW 299
           R++H + +  Q +Y ++ + E+  H  L P W
Sbjct: 407 RRWHALGREEQAKYYELARRERQLHMQLYPDW 438


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 415 IRSLTRTRKYH*IVKRSQKRYTKVGQYEKLHHFHLS 308
           IR LT+ R      +R  K+Y   GQY+K +  H++
Sbjct: 89  IRHLTQKRARD--WERLSKKYDPQGQYKKRYEEHVA 122


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 226 VSRNTFVGGDHRCCDCGA-VRETHRTTVGTDGNDEVFHTDQL 348
           +S + F  GD+R  DCG     TH+  +  +   EV   D++
Sbjct: 547 LSPDQFCNGDNRPPDCGQNCMCTHQVDIPLNAIVEVVLVDEV 588


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 123 PITTTTQINFTEGDVFPNNAANC 55
           P+T+++ I     D+ PN   NC
Sbjct: 121 PVTSSSNILQNLADITPNVTPNC 143


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 123 PITTTTQINFTEGDVFPNNAANC 55
           P+T+++ I     D+ PN   NC
Sbjct: 121 PVTSSSNILQNLADITPNVTPNC 143


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 551 SVVVKTCWLIY 519
           S ++ TCW+IY
Sbjct: 52  STILGTCWIIY 62


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 123 PITTTTQINFTEGDVFPNNAANC 55
           P+T+++ I     D+ PN   NC
Sbjct: 121 PVTSSSNILQNLADITPNVTPNC 143


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,502
Number of Sequences: 336
Number of extensions: 4301
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)