Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_L20
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.17 
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.40 
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    29   0.70 
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    28   1.2  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    28   1.2  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    26   4.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.5  

>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
 Frame = -2

Query: 372 NVVKNATPKLVSMKNFIISICPHSGSMSFPHSPTVTTSMITSHKCISRNQNVKVDHS*NE 193
           N+V+ A     S  +   S+   + S S   +P+ TTS  +S    S + + K   S ++
Sbjct: 109 NIVEGAASSSSSSSSSSSSLVSSTTSSSSSATPS-TTSSSSSSSSSSSSSSSKSSSSSSK 167

Query: 192 GGSKYPGVTLSTLTTSSENDN----IYPITTTTQINFT 91
             S+    T S  TTS ++ +    ++P TT +  N T
Sbjct: 168 SSSRSSSRTTSHRTTSHKSSSYRPTVFPYTTISHYNIT 205


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 360 NATPKLVSMKNFIISICPHSGSMSFPHSPTVTTSMI 253
           N  PK + M +   S  P SGS SF  + T +TSM+
Sbjct: 197 NNNPKEIEMNSDTTSSVPKSGSTSFSANVTSSTSMV 232


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1250

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 615  HMQGYV-PXKAPIAHRIIATIRISSGKDLLVNLPSG 511
            H + Y+ P    I H I  T+RIS+GKD++ N+  G
Sbjct: 1138 HCKSYINPPIEQIVHDI-PTVRISNGKDVIENIHEG 1172


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 86  PSVKFICVVVVIGYILSFSDDVVNVLSVTPGYLL 187
           PS  FIC+V+ +  + +F  D++ +  +  G+L+
Sbjct: 259 PSESFICIVLSMVLVSAFFTDIIGIHPIFGGFLV 292


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -1

Query: 379 IVKRSQKRYTKV-GQYEKLHHFHLSPQWFYEFPAQPHSHNIDDHLPQM 239
           I+K   + Y K+    E L  F ++ ++FY++PA P  ++I D LP +
Sbjct: 279 ILKNLAEIYIKIHAPREILKQFEIAWKYFYQYPAPPIGNDIFD-LPTL 325


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 588 APIAHRIIATIRISSGKDLLVNLPSGV 508
           AP    +IA  + SSG DLL+  PS +
Sbjct: 565 APGIREVIAFPKTSSGADLLIGSPSAI 591


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 286 PAQPHSHNIDDHLPQMYFEKPERESRP 206
           PA  +S N+D + P  Y E P  E +P
Sbjct: 844 PADFNSLNVDFYEPHSYLESPAPEPQP 870


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,187,522
Number of Sequences: 5004
Number of extensions: 67947
Number of successful extensions: 199
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)