Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_L20
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0013 - 217743-217839,218021-218131,218226-218428,218540-21... 82 4e-16
03_03_0011 - 13716864-13716968,13717102-13717153,13717588-137177... 82 5e-16
07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935... 79 3e-15
08_02_0580 - 18953208-18953513,18953668-18953868,18953929-189540... 30 1.7
06_01_0665 - 4855870-4855956,4856407-4856482,4856794-4856910,485... 28 6.8
06_03_1193 - 28298656-28298754,28299303-28299377,28299456-282995... 28 9.0
04_03_0858 + 20357519-20357573,20358072-20358119,20360675-203609... 28 9.0
>04_01_0013 -
217743-217839,218021-218131,218226-218428,218540-218654,
219038-219204,219505-219565,219872-219990,220206-220286
Length = 317
Score = 82.2 bits (194), Expect = 4e-16
Identities = 61/218 (27%), Positives = 100/218 (45%), Gaps = 2/218 (0%)
Frame = +2
Query: 95 KFICVVVVIGYIL-SFSDDVVNVLSVTPGYLLPPSFQLWSTFTFWFLEIHLWEVIIDVVT 271
K + VV+V GY+L ++ L++ P +P +W+ FT ++E L I +
Sbjct: 38 KGLVVVLVGGYVLLQLLPSSLDYLAIIPAKTIP---FVWTVFTAGYIEQVLPGAIGSSLG 94
Query: 272 VGLCGKLIEPLWGQMEMMKFFILTNFGVAFLTTFYYLVIFACTGQTSYLFDIHVHGLAGY 451
+ CGK IEP+WG+ E +KF IL N L + + ++ TG+ S+L + G G
Sbjct: 95 LLFCGKDIEPVWGRKEFLKFIILVNSICGVLAFCFAVALYYVTGKESFLV-TPLSGFHGA 153
Query: 452 LAAVSVAVKQIMPDHLLIKTPLGKLTNRSXXXXXXXXXXXXXXXXXXXGTYPCMWGSGTI 631
LA V +KQ++P+ L K+ + + SG
Sbjct: 154 LAGFLVGLKQLLPNLELPMCFFWKIKAKWMPFFVLCFSTIMAFIVPDSINFLPTLLSGMY 213
Query: 632 LSWIYLRFWQRH-TNGTRGDMAXXXXXXXXXPTVLQPV 742
+SWIYLR++QR+ G +GD + P ++PV
Sbjct: 214 VSWIYLRYFQRNPLTGLKGDSSDDFSFPSLFPDAMRPV 251
>03_03_0011 -
13716864-13716968,13717102-13717153,13717588-13717719,
13718289-13718491,13718584-13718695,13719308-13719474,
13720059-13720119,13720527-13720645,13720911-13720943
Length = 327
Score = 81.8 bits (193), Expect = 5e-16
Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 2/218 (0%)
Frame = +2
Query: 95 KFICVVVVIGYI-LSFSDDVVNVLSVTPGYLLPPSFQLWSTFTFWFLEIHLWEVIIDVVT 271
K + VV+ +G+I + V L++ P +P + W+ T ++E + VI+ +V
Sbjct: 22 KGLAVVLFLGHIVIRLFPSAVTYLALIPSRTIPFA---WNLVTSGYIEQTIPGVIVSIVG 78
Query: 272 VGLCGKLIEPLWGQMEMMKFFILTNFGVAFLTTFYYLVIFACTGQTSYLFDIHVHGLAGY 451
+ + GK++EPLWG E++KF L N + ++++ T Q YL+ + G G
Sbjct: 79 LLVLGKVLEPLWGAKELLKFIFLVNLSTSACVFVTAIILYYITQQEIYLY-TPLSGFYGV 137
Query: 452 LAAVSVAVKQIMPDHLLIKTPLGKLTNRSXXXXXXXXXXXXXXXXXXXGTYPCMWGSGTI 631
L+ V +KQI+PD + L P + G
Sbjct: 138 LSGFLVGIKQILPDQEITLFLLNIKAKWIPSLVAFISVSLSFFMKDSVSYIPIIL-FGIY 196
Query: 632 LSWIYLRFWQRHTN-GTRGDMAXXXXXXXXXPTVLQPV 742
LSWIYLR++Q+ G +GD + P L+PV
Sbjct: 197 LSWIYLRYFQKRLEAGLKGDPSDEFSFSSFFPEFLRPV 234
>07_03_1529 + 27491963-27492465,27493045-27493154,27493384-27493510,
27494082-27494430,27494975-27495251,27496236-27496333,
27498090-27498214,27498270-27498326,27498328-27498370,
27498581-27498667,27498802-27498882,27499735-27499901,
27499987-27500098,27500188-27500390,27500473-27500607,
27501106-27501205
Length = 857
Score = 79.4 bits (187), Expect = 3e-15
Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 1/180 (0%)
Frame = +2
Query: 206 WSTFTFWFLEIHLWEVIIDVVTVGLCGKLIEPLWGQMEMMKFFILTNFGVAFLTTFYYLV 385
W+ T ++E+ + VII +V + L GKL+EPLWG E+ KF + NF + +
Sbjct: 605 WNLITGGYVELTIPGVIISIVGLLLFGKLLEPLWGSKELSKFIFVVNFSTSLCVFITAIA 664
Query: 386 IFACTGQTSYLFDIHVHGLAGYLAAVSVAVKQIMPDHLLIKTPLGKLTNRSXXXXXXXXX 565
++ T + SYL+ + G G L + V +KQ+M + L L K+ +
Sbjct: 665 LYYTTQEESYLY-APLSGFYGVLTGLLVGIKQLMSEQELNLFVL-KIKAKWIPSLVALIS 722
Query: 566 XXXXXXXXXXGTYPCMWGSGTILSWIYLRFWQRH-TNGTRGDMAXXXXXXXXXPTVLQPV 742
+Y + G +SWIYLR++QR G +GD + P L+PV
Sbjct: 723 VIVSFFVKELVSYLPVILFGIYMSWIYLRYFQRRLETGLKGDPSEEFSFSSFFPEFLRPV 782
>08_02_0580 -
18953208-18953513,18953668-18953868,18953929-18954009,
18954096-18954410,18954493-18954636,18954733-18954822,
18954907-18954983,18955122-18955182,18955264-18955490,
18955581-18955740,18955825-18956025,18956114-18956209,
18956380-18956565,18956641-18956810,18957044-18957275,
18958652-18959029
Length = 974
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 272 VGLCGKLIEPLWGQMEMMKFFILTNFGVAFLTTFYY 379
V L L+ L+G M FF+ NFG+ FL F +
Sbjct: 283 VTLLSALLTVLFGMMFQFDFFLHNNFGILFLLFFLF 318
>06_01_0665 -
4855870-4855956,4856407-4856482,4856794-4856910,
4857062-4857127,4858578-4858670,4858788-4858909,
4859810-4860365,4860485-4860628,4860698-4860831,
4861003-4861100,4861172-4861353,4861464-4861540,
4862083-4862305,4862580-4862745,4862836-4863040,
4864981-4865199
Length = 854
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 135 HFPMMSSMYSVSLQGICCLLHFNYGLLSRSGFSKYIC 245
+F +M +Y S+ C +F+YGL ++GF + C
Sbjct: 505 YFYLMGYLYKGSIF-FCAFPYFHYGLYRKNGFGPHEC 540
>06_03_1193 -
28298656-28298754,28299303-28299377,28299456-28299544,
28299679-28299760,28300385-28300474,28300557-28300655,
28300733-28300852,28300968-28301084,28301174-28301309,
28301415-28301584,28301744-28301947,28302032-28302157,
28302841-28303101,28303215-28303229
Length = 560
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 271 CGAVRETHRTTVGTDGNDEVFHTDQ 345
C V +T RTT+G G D++ H D+
Sbjct: 32 CTVVADTVRTTLGPRGMDKLIHDDK 56
>04_03_0858 +
20357519-20357573,20358072-20358119,20360675-20360922,
20361152-20361363,20361480-20361741,20361832-20362143
Length = 378
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = +1
Query: 580 YWCLXRDVSLHVGQWDDSILDISKVLA----KTHQWY 678
Y CL RD+++ G+W S L++ A K H W+
Sbjct: 284 YGCLHRDMTVGFGKWSWSPLELEDPFAGGEGKVHLWH 320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,077,411
Number of Sequences: 37544
Number of extensions: 447281
Number of successful extensions: 1115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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