Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_L19
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    29   0.52 
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    29   0.69 
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    28   0.91 
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    26   3.7  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    26   4.8  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    25   8.5  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   8.5  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   8.5  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    25   8.5  

>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -1

Query: 434 PSPKTETMQYIVLFSQRTVHEPSVVLSQ*QEELVCSPAPFFCSIVQVTTY 285
           P     T    ++++QR  + P  VL    E  VC P+PF   ++    Y
Sbjct: 215 PKEALRTRGLAIVWNQRWKNSPESVLKARSEITVCKPSPFHPQLIAGGAY 264


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +1

Query: 88  IMEVKECNDLDEENQFIVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSAVVESCLGQLTK 267
           ++E  E +D DE N  + +  S + K+ +EN+     Y H+    +   V +S     TK
Sbjct: 485 LVETSELSDSDE-NSVLSNKSSTLSKKVVENT-SPLKYTHSASKSFIGEVQDSLQALKTK 542

Query: 268 LQKP 279
             KP
Sbjct: 543 AHKP 546


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 85  KIMEVKECNDLDEENQFIVDDVSKIIKEAIENSIGGTA 198
           K M+ K+  + DE+N+F  +  S I K +  +S+GGT+
Sbjct: 59  KSMKRKDVYEFDEDNEFEFEMGSLIHKPSRAHSLGGTS 96


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 415 QCST*FYSPNGPCTSH 368
           +C T F  P GPCT H
Sbjct: 301 RCGTRFADPRGPCTYH 316


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 130 QFIVDDVSKIIKEAIENSIGGTAYQH 207
           +F   D+S+ +  AI N+IG  AY H
Sbjct: 306 EFAPQDISRSLLLAISNNIGQIAYLH 331


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = +1

Query: 103 ECNDLDEENQFIVDDVSKIIKEAIENSI 186
           E +DLDE NQF   D SKI +EA E +I
Sbjct: 57  ELSDLDE-NQFENFDESKIGREAEEPTI 83


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = +1

Query: 91   MEVKECNDLDEENQFIVDDVSKIIKEAIENSIGGTAYQHNNVNQWTSA 234
            + + + N  +   + I+D +   +K+ ++++   TAY  N  N  T A
Sbjct: 1083 LHMSKLNKSNSSKKIIIDPLKDSMKDLVQHAFTITAYDSNIHNALTRA 1130


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 118 DEENQFIVDDVSKIIKEAIENSIGGTAYQH 207
           DE   F +DD+ K+I E         A++H
Sbjct: 700 DENRAFTLDDIPKVISEQRNREHRPNAFRH 729


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 342 RTCMQSCTILLQYCAGHYIFVWFL 271
           RT + SC ++  Y   +YIF  FL
Sbjct: 350 RTILGSCVLIFTYFMSYYIFSNFL 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,322
Number of Sequences: 5004
Number of extensions: 48321
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)